Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0520.Seq
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 521 GLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRI 631
           G++F   C+G V+L       +  ++ W S +  L I
Sbjct: 780 GILFWYLCAGHVRLPYTFEQFHNKELLWTSVKKALMI 816


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 521 GLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRI 631
           G++F   C+G V+L       +  ++ W S +  L I
Sbjct: 818 GILFWYLCAGHVRLPYTFEQFHNKELLWTSVKKALMI 854


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +2

Query: 554 VKLLPDLSDLYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSLSS*PGLRTV 733
           +  L  L+DLY  + T +SY   + I +    N         +I  R   LS     RT+
Sbjct: 388 ISALRALNDLYNVKNTLDSYNGSMEINQNIAQN--IDHAKNTIIDYRNNDLSINEEKRTI 445

Query: 734 D 736
           +
Sbjct: 446 E 446


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 193 FLTRDLIWMHWQNVLK 240
           FLTR  +W+ W+  +K
Sbjct: 381 FLTRGDLWISWEEGMK 396


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 102 YFVGVSCFRYVYIGYISVIVS 40
           Y +G+ C   V + + S IVS
Sbjct: 381 YLLGIQCLTVVCLAFWSFIVS 401


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 530 FGEHCSGLVKLLPD 571
           FG+ C G +KL PD
Sbjct: 644 FGDVCRGKLKLPPD 657


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,652
Number of Sequences: 438
Number of extensions: 4220
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)