Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0520.Seq
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR ...    33   0.26 
At2g05080.1 68415.m00530 hypothetical protein low similarity to ...    29   2.4  
At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase, pu...    29   4.3  
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative...    29   4.3  
At4g13090.1 68417.m02040 xyloglucan:xyloglucosyl transferase, pu...    28   5.7  
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil...    27   9.9  

>At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 857

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +2

Query: 476 GRPGVRAVHAEETPE-GLMFGEHCSGLVKLLPDLSDLYTAQVTWNSYQSMLRIQKMYVMN 652
           GR  +  +  ++  E G      C GL   +  L  L   + TWN +Q +    K YV N
Sbjct: 339 GRENIEPMLVKKMEEIGKQIVVRCGGLPLAITVLGGLLATKSTWNEWQRVCENIKSYVSN 398

Query: 653 YMTSPGSGVLIPGRKMSLS 709
             +S GS  ++    + LS
Sbjct: 399 GGSSNGSKNMLVADVLCLS 417


>At2g05080.1 68415.m00530 hypothetical protein low similarity to
           SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 1238

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 261 DVCALIEDYLDNNEDYIASMVQEHYEDPYWYQIKLYYIQLEGLAAGYN 404
           D C  +   LDN+++YI  + +  +    WY  +L+ I L+ L +  N
Sbjct: 710 DACEAL-GLLDNDQEYIDDLKRTSFWSSGWYLRQLFVIMLDALISPEN 756


>At4g13080.1 68417.m02039 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase EXGT-A1 GI:5533309 from
           [Arabidopsis thaliana]
          Length = 292

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 578 DLYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSL 706
           D +T  + WN YQ +L +  + V  +  +   G+  P + M +
Sbjct: 150 DFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYPSKPMQV 192


>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
           (FUT2) identical to SP|O81053 Probable
           fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from [Arabidopsis thaliana]
          Length = 539

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 324 QEHYEDPYWYQIKLYYIQLEGLAAGYNDATKSMY-EWLTV-RDILWIN 461
           +E Y+ P   ++KL  + +  L  GY +  K+MY E  TV RD++ I+
Sbjct: 375 EEQYKQPSEEELKLKSVLVTSLTTGYFEILKTMYWENPTVTRDVIGIH 422


>At4g13090.1 68417.m02040 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase EXGT-A1 GI:5533309 from
           [Arabidopsis thaliana]
          Length = 292

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 575 SDLYTAQVTWNSYQSMLRIQKMYVMNYMTSPGSGVLIPGRKMSL 706
           +  +T  + WN YQ +  + K+ +  +     SGV  P + M L
Sbjct: 146 TSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQL 189


>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 559

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +3

Query: 168 LFSWFSGRIPHKRSDMDALAK---CSERILL*KTDVCALIEDYLDNNEDYIASMVQEHYE 338
           + SW  G      SD++++ K    SE IL  + D    IED + N E  I     +H  
Sbjct: 242 VLSWRFGGDQGAESDLESIHKRGSLSEPIL--QRDGLEEIEDGVVNGEHQIVDDDDDHQR 299

Query: 339 DPYWYQIKLYYIQL 380
             YW ++ ++ I L
Sbjct: 300 YYYWKRLVIWAITL 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,381,964
Number of Sequences: 28952
Number of extensions: 309234
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)