Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0519X.Seq
         (436 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   0.95 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   6.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.7  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = +3

Query: 273 FH-GAYENEGNCRSLSWR------NCAECSYHGSRVLQ*LSKTSHKRCR 398
           FH GA+  EG C+S   R      + +EC  +G  V+   ++T+ K CR
Sbjct: 15  FHFGAFTCEG-CKSFFGRTYNNISSISECKNNGECVINKKNRTACKACR 62


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 116 ILCCWGSS 93
           + CCWG S
Sbjct: 11  VACCWGKS 18


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 228 TLILGLPPSLTTSKGQC 178
           +L+LGL PS   + G+C
Sbjct: 17  SLLLGLYPSYLQTVGKC 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,054
Number of Sequences: 336
Number of extensions: 2159
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)