Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0518.Seq
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...   120   2e-29
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...   120   2e-29
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    99   3e-23
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   3.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   3.3  

>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score =  120 bits (288), Expect = 2e-29
 Identities = 53/70 (75%), Positives = 63/70 (90%)
 Frame = +3

Query: 510 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 689
           LGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNR+V +  Q+FK+K+K D++ N RA
Sbjct: 28  LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVEYCTQDFKKKHKADISGNPRA 87

Query: 690 LRRLRTACER 719
           LRRLRT CER
Sbjct: 88  LRRLRTQCER 97



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/26 (88%), Positives = 23/26 (88%)
 Frame = +1

Query: 430 INEPTAAAIAYGLDKKGTGERNVLIF 507
           INEPTAAAIAYGLDKK   ERNVLIF
Sbjct: 1   INEPTAAAIAYGLDKKAEKERNVLIF 26


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score =  120 bits (288), Expect = 2e-29
 Identities = 53/70 (75%), Positives = 63/70 (90%)
 Frame = +3

Query: 510 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 689
           LGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNR+V +  Q+FK+K+K D++ N RA
Sbjct: 28  LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVEYCTQDFKKKHKADISGNPRA 87

Query: 690 LRRLRTACER 719
           LRRLRT CER
Sbjct: 88  LRRLRTQCER 97



 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 23/26 (88%), Positives = 23/26 (88%)
 Frame = +1

Query: 430 INEPTAAAIAYGLDKKGTGERNVLIF 507
           INEPTAAAIAYGLDKK   ERNVLIF
Sbjct: 1   INEPTAAAIAYGLDKKAERERNVLIF 26


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 99.1 bits (236), Expect = 3e-23
 Identities = 41/70 (58%), Positives = 61/70 (87%)
 Frame = +3

Query: 510 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 689
           LGGGTFDVSILTI++G+FEV +T+GDTHLGGEDFD +++++F++  K+K+KKD+  +K+A
Sbjct: 27  LGGGTFDVSILTIDNGVFEVVATSGDTHLGGEDFDQKVMDYFIKMVKQKHKKDIRADKKA 86

Query: 690 LRRLRTACER 719
           L++LR   E+
Sbjct: 87  LQKLRREVEK 96



 Score = 44.4 bits (100), Expect = 9e-07
 Identities = 20/26 (76%), Positives = 24/26 (92%)
 Frame = +1

Query: 430 INEPTAAAIAYGLDKKGTGERNVLIF 507
           INEPTAAAIAYGLDKKG  E+N+L++
Sbjct: 1   INEPTAAAIAYGLDKKG-AEQNILVY 25


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 385 TKDAGTISGLNVLRIINEPTAA 450
           TKDAG +S   +  ++N+P  A
Sbjct: 330 TKDAGLLSYPEICTLLNDPQNA 351


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = +3

Query: 273 FH-GAYENEGNCRSL---SWQNCA---ECSYHGSRVLQ*LSKTSHKRCR 398
           FH GA+  EG C+S    ++ N +   EC  +G  V+   ++T+ K CR
Sbjct: 15  FHFGAFTCEG-CKSFFGRTYNNISSISECKNNGECVINKKNRTACKACR 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,718
Number of Sequences: 336
Number of extensions: 4016
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)