Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0518.Seq
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 161 9e-41
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 157 2e-39
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 136 4e-33
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 134 1e-32
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 120 2e-28
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 65 8e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 58 1e-09
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 47 3e-06
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 30 0.38
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 1.2
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 28 1.2
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 2.7
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 3.6
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 4.7
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.2
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.2
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 8.2
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 161 bits (391), Expect = 9e-41
Identities = 72/89 (80%), Positives = 81/89 (91%)
Frame = +2
Query: 2 ANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKH 181
ANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRLIGRKF+D VQ+DMKH
Sbjct: 28 ANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRKFDDPEVQSDMKH 87
Query: 182 WPFEVVSDGGKPKIKVAYKGEDKTFSPRK 268
WPF+V+S GKP ++V YKGE KTF+P +
Sbjct: 88 WPFKVISKDGKPVLQVEYKGETKTFTPEE 116
Score = 140 bits (340), Expect = 1e-34
Identities = 68/83 (81%), Positives = 74/83 (89%)
Frame = +1
Query: 259 PEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINE 438
PEE+SSMVL KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINE
Sbjct: 114 PEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINE 173
Query: 439 PTAAAIAYGLDKKGTGERNVLIF 507
PTAAAIAYGLD+ GE NVLIF
Sbjct: 174 PTAAAIAYGLDRSNQGESNVLIF 196
Score = 130 bits (315), Expect = 1e-31
Identities = 58/70 (82%), Positives = 66/70 (94%)
Frame = +3
Query: 510 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 689
LGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+ N RA
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNARA 257
Query: 690 LRRLRTACER 719
+RRLRTACER
Sbjct: 258 VRRLRTACER 267
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 157 bits (380), Expect = 2e-39
Identities = 70/89 (78%), Positives = 79/89 (88%)
Frame = +2
Query: 2 ANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKH 181
ANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRLIGR+F D VQ+DMKH
Sbjct: 28 ANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRLIGRRFNDPEVQSDMKH 87
Query: 182 WPFEVVSDGGKPKIKVAYKGEDKTFSPRK 268
WPF+V+ GKP I+V +KGE KTF+P +
Sbjct: 88 WPFKVIEKDGKPLIQVEFKGETKTFTPEE 116
Score = 134 bits (324), Expect = 1e-32
Identities = 65/83 (78%), Positives = 73/83 (87%)
Frame = +1
Query: 259 PEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINE 438
PEE+SSMVL KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINE
Sbjct: 114 PEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINE 173
Query: 439 PTAAAIAYGLDKKGTGERNVLIF 507
PTAAAIAYGLD+ E NVLIF
Sbjct: 174 PTAAAIAYGLDRSNQHETNVLIF 196
Score = 129 bits (312), Expect = 3e-31
Identities = 58/70 (82%), Positives = 65/70 (92%)
Frame = +3
Query: 510 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 689
LGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD+ N RA
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKDITGNARA 257
Query: 690 LRRLRTACER 719
+RRLRTACER
Sbjct: 258 VRRLRTACER 267
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 136 bits (328), Expect = 4e-33
Identities = 62/90 (68%), Positives = 81/90 (90%)
Frame = +1
Query: 238 G*RQNLFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 417
G ++ PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLN
Sbjct: 140 GKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLN 199
Query: 418 VLRIINEPTAAAIAYGLDKKGTGERNVLIF 507
V+RI+NEPTAAAIAYGLDK T E++++++
Sbjct: 200 VIRIVNEPTAAAIAYGLDKTDT-EKHIVVY 228
Score = 118 bits (285), Expect = 6e-28
Identities = 52/89 (58%), Positives = 68/89 (76%)
Frame = +2
Query: 2 ANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKH 181
ANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NTIFD KRLIGRKF++ T+ D+K
Sbjct: 61 ANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKS 120
Query: 182 WPFEVVSDGGKPKIKVAYKGEDKTFSPRK 268
+PF +V+D +P ++V G+ K F+P +
Sbjct: 121 FPFHIVNDKNRPLVEVNVGGKKKKFTPEE 149
Score = 88.2 bits (209), Expect = 1e-18
Identities = 36/70 (51%), Positives = 55/70 (78%)
Frame = +3
Query: 510 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 689
LGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+ + +A
Sbjct: 230 LGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTKDLKA 289
Query: 690 LRRLRTACER 719
+ +L+ E+
Sbjct: 290 MGKLKREVEK 299
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 134 bits (324), Expect = 1e-32
Identities = 58/88 (65%), Positives = 72/88 (81%)
Frame = +2
Query: 5 NDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHW 184
NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP NT+FDAKRLIGR++ED Q D+KHW
Sbjct: 33 NDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRNTVFDAKRLIGRRYEDPETQKDIKHW 92
Query: 185 PFEVVSDGGKPKIKVAYKGEDKTFSPRK 268
PF+V+ + G P I+V Y GE K F+ ++
Sbjct: 93 PFKVIDNNGIPTIEVNYLGEKKQFTAQE 120
Score = 126 bits (305), Expect = 2e-30
Identities = 63/90 (70%), Positives = 73/90 (81%)
Frame = +1
Query: 238 G*RQNLFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLN 417
G ++ +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLN
Sbjct: 111 GEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLN 170
Query: 418 VLRIINEPTAAAIAYGLDKKGTGERNVLIF 507
VLRIINEPTAAAIAYGLD K +NVLIF
Sbjct: 171 VLRIINEPTAAAIAYGLDAKSDKPKNVLIF 200
Score = 115 bits (277), Expect = 6e-27
Identities = 51/70 (72%), Positives = 61/70 (87%)
Frame = +3
Query: 510 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 689
LGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++ + RA
Sbjct: 202 LGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISDDPRA 261
Query: 690 LRRLRTACER 719
LRRLR+ACER
Sbjct: 262 LRRLRSACER 271
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 120 bits (289), Expect = 2e-28
Identities = 53/73 (72%), Positives = 64/73 (87%)
Frame = +1
Query: 259 PEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINE 438
P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR++NE
Sbjct: 160 PSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNE 219
Query: 439 PTAAAIAYGLDKK 477
PTAAA+AYGLDKK
Sbjct: 220 PTAAALAYGLDKK 232
Score = 90.2 bits (214), Expect = 3e-19
Identities = 39/70 (55%), Positives = 54/70 (77%)
Frame = +3
Query: 510 LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRA 689
LGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+ ++ A
Sbjct: 242 LGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKDRLA 301
Query: 690 LRRLRTACER 719
++R+R A E+
Sbjct: 302 VQRIREAAEK 311
Score = 81.0 bits (191), Expect = 2e-16
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +2
Query: 2 ANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMK 178
AN +G RTTPS VAFT D ERL+G +AK Q +NP NT F KRLIGR+F++ VQ D+K
Sbjct: 76 ANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQRDIK 135
Query: 179 HWPFEVVSDGGKPKIKVAYKGEDKTFSP 262
P+++V + KT+SP
Sbjct: 136 EVPYKIVEHSNG---DAWLEARGKTYSP 160
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 65.3 bits (152), Expect = 8e-12
Identities = 31/63 (49%), Positives = 45/63 (71%)
Frame = +1
Query: 286 TKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 465
TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA+ YG
Sbjct: 127 TKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYG 186
Query: 466 LDK 474
+ K
Sbjct: 187 ITK 189
Score = 62.5 bits (145), Expect = 6e-11
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +3
Query: 513 GGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 692
G + VSI+ G F +KST D +LG + D ++++F EFK KYK D+ +N +A
Sbjct: 207 GHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSNPKAT 266
Query: 693 RRLRTACER 719
RL TA ER
Sbjct: 267 FRLATAVER 275
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 5 NDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQ-ADMKH 181
N+ NR+TPS V++ + R +G+AAK+ A N NT+ KRL GR ++D ++ +
Sbjct: 32 NEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKDIESNF 91
Query: 182 WPFEVVSDGGKPKIKVAYKGEDKTFS 259
++ G KV Y E+ FS
Sbjct: 92 ISAKLTEVDGFVGAKVQYLNEETAFS 117
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/84 (34%), Positives = 50/84 (59%)
Frame = +1
Query: 253 LFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRII 432
L E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL VL++I
Sbjct: 138 LTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLI 197
Query: 433 NEPTAAAIAYGLDKKGTGERNVLI 504
++P A +A ++ ++ V++
Sbjct: 198 HDPAAVILALMYSEEVLIDKTVVV 221
Score = 52.4 bits (120), Expect = 6e-08
Identities = 23/68 (33%), Positives = 41/68 (60%)
Frame = +3
Query: 513 GGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRAL 692
G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D N R+L
Sbjct: 225 GATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPRKNARSL 284
Query: 693 RRLRTACE 716
+LR CE
Sbjct: 285 AKLRAQCE 292
Score = 41.9 bits (94), Expect = 9e-05
Identities = 22/91 (24%), Positives = 49/91 (53%)
Frame = +2
Query: 2 ANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKH 181
AN++GNR PS +++ + G A+ Q+ N +N++ + + L+G+ ++ T+ H
Sbjct: 50 ANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNSVTNFRDLLGKSHDELTLH--HCH 107
Query: 182 WPFEVVSDGGKPKIKVAYKGEDKTFSPRKSV 274
+ V+ G+ K+ + ED+ P++ +
Sbjct: 108 YSANPVNVEGQIGFKITVQ-EDEESDPKEKI 137
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/101 (27%), Positives = 49/101 (48%)
Frame = +1
Query: 247 QNLFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 426
+N EE+ +M + AE + + + V+TVP +FN+ QR +A I +VL
Sbjct: 133 ENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLA 192
Query: 427 IINEPTAAAIAYGLDKKGTGERNVLIFASAAVPSTCPSLPS 549
+I++ A AI Y L + + + I + ST ++ S
Sbjct: 193 LIDDNVAVAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVIS 233
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 20 RTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRK-FEDATVQADMKHWP 187
R S VAF ER+ G A N P ++I + K L+ E VQ +P
Sbjct: 55 RKEQSAVAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTAGLESVLVQKYQSSYP 111
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 29.9 bits (64), Expect = 0.38
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +2
Query: 38 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 217
+ F+D E GD A + P + AK L+G+ + + D P++V+ D P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184
Query: 218 KIKVAYKGEDKTF 256
+K+ G + F
Sbjct: 185 -LKLMIDGTVRNF 196
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 613 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVP 518
+KSSP K VSP V SK +S V + S +P
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIP 234
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +1
Query: 469 DKKGTGERNV----LIFASAAVPSTCPSLPSRMVSSR*NPPPATPTWEVR--TLTIAWST 630
D K GE N+ I + P T S P S NPP + P +V + T+A ST
Sbjct: 53 DDKTVGEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAEST 112
Query: 631 TLSRS 645
+ +++
Sbjct: 113 STTQT 117
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 505 FASAAVPSTCPSLPSRMVSSR*NPPPATPTW 597
F ++PST P++PS +S + PP T ++
Sbjct: 295 FMKPSIPSTIPTIPSAYSASVSSQPPLTHSY 325
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 548 DGKDGHVEGTAAEAKISTFRSPVPFLSR 465
D DGH+ T A + TF P P LS+
Sbjct: 28 DSFDGHLSITEATYDVDTFLKPSPALSK 55
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 649 LNSWTKWLTMRLSKSSPPKWVSPAVDF 569
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 8.2
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +1
Query: 340 VITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFA-SA 516
V TV Y S QA IS +IN PT A++ + + +F+ SA
Sbjct: 114 VQTVTEYVTLSCGQAFTSTVDISSSTSSSVINSPTGTAVSSQISTLSMSPSSTPVFSPSA 173
Query: 517 AVPSTCPSLPSRMVSSR*NPPPATPT 594
+V S S S + S + +T T
Sbjct: 174 SVSSKVASSVSYVSSEPSDSSSSTNT 199
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 583 PAVDFTSKIPSSMVRMDTSKVPPPRQR 503
P+V FT + + ++R+ S +PPP R
Sbjct: 378 PSVMFTMRYLALILRVQNSNMPPPAPR 404
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 268 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 390
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,000
Number of Sequences: 5004
Number of extensions: 65786
Number of successful extensions: 240
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -