Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0517.Seq
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.33 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.3  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 295 GSERSILVGEHAAHQGFVVAEVDFLHFAN 381
           G + S LVG+ +A + FVVA V FL   N
Sbjct: 720 GDKYSRLVGDGSARRRFVVAVVGFLRRHN 748


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 484 PSNTELLRMHHLISP 528
           P+ T  + MHHL++P
Sbjct: 251 PAPTSSIMMHHLVNP 265


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 364 NRPRQQRIPGVRRVPQPG 311
           +RP   R P  RRV +PG
Sbjct: 201 DRPSSGRSPRTRRVKKPG 218


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 564 AVQQLVPPPGVKGRDKMVHTK 502
           A+  L  PPGV+  + +VH K
Sbjct: 288 ALSGLKAPPGVEHFEDVVHKK 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,508
Number of Sequences: 336
Number of extensions: 3709
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)