Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0517.Seq
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   5.8  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   5.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.7  

>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 301 HCHDVYQKQNI*NRNCARRWLEKHTVS 221
           H   + + Q++ + N   RWLEKH  S
Sbjct: 139 HSLGIVEGQSVSHANVGERWLEKHLQS 165


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 587 HDGGIQILQCSS*FRHPALRGEIRWCIRSSSVFDGLLRYH 468
           +D  +    C   F  P LRGE R C  +   ++  L YH
Sbjct: 61  YDNSVHPNNCKGSFLCPMLRGENRACPNAYMKYNRSLIYH 100


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 499  VQYLMDCCGITYNQAVQALRSNDWDLWQA 413
            + Y+M+   ++Y  A Q L  N+W++  A
Sbjct: 1157 ITYVMNYTSVSYQTAEQYLSGNNWNVQNA 1185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,018
Number of Sequences: 5004
Number of extensions: 61585
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)