Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0517.Seq
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0148 - 41477708-41477914,41478004-41478179,41478334-41478373     31   1.1  
01_07_0144 - 41446735-41446941,41447031-41447206,41447361-41447400     31   1.1  
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694...    28   7.9  

>01_07_0148 - 41477708-41477914,41478004-41478179,41478334-41478373
          Length = 140

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 415 PARDPSRCCVKPAQPGCK*YRNN-PSNTELLRMHHLISPLNAGWRN*LLHC 564
           P R   RC ++ AQPG +  R   PS  E+L  HH +  L   +    + C
Sbjct: 25  PRRAQRRCLLRRAQPGIRPPRRPLPSKREVLAQHHELRRLREDFARLQVQC 75


>01_07_0144 - 41446735-41446941,41447031-41447206,41447361-41447400
          Length = 140

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 415 PARDPSRCCVKPAQPGCK*YRNN-PSNTELLRMHHLISPLNAGWRN*LLHC 564
           P R   RC ++ AQPG +  R   PS  E+L  HH +  L   +    + C
Sbjct: 25  PRRAQRRCLLRRAQPGIRPPRRPLPSKREVLAQHHELRRLREDFARLQVQC 75


>06_01_0903 -
           6939672-6939782,6940051-6940110,6940221-6940322,
           6940464-6940513,6940686-6940750,6940849-6940931,
           6941117-6941140,6941798-6941856,6942041-6942174,
           6942823-6942884,6942908-6942976
          Length = 272

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 514 GAYEVVQYLMDCCGITYNQAVQALRSNDWDL 422
           G+ + VQ  M   G +   A+QAL+++DW L
Sbjct: 29  GSRDKVQQFMTITGASEKVALQALKASDWHL 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,861,676
Number of Sequences: 37544
Number of extensions: 434430
Number of successful extensions: 1024
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)