Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0517.Seq
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33779| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6519| Best HMM Match : PNP_UDP_1 (HMM E-Value=0.16)                 29   2.6  
SB_25632| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)                   29   3.5  
SB_47724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_33779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 211 LIVSLLCASPTIGAHSFGFKCFAFGIRHGSERSILVGEHAAHQGFVVAEV 360
           ++V+++     IG H    + F FG  HGS R++ +G HA     +VA V
Sbjct: 41  VLVAMVAREHCIGGHGSA-RTFCFG-GHGSARTLCIGGHAREYFVLVAMV 88


>SB_6519| Best HMM Match : PNP_UDP_1 (HMM E-Value=0.16)
          Length = 238

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 436 CCVKPAQPGCK*YRNNPSNT 495
           C +K   PG   YRNNP+NT
Sbjct: 62  CSIKKLAPGVDIYRNNPTNT 81


>SB_25632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 134 CAITLMLNDALPF*FFHN-RVTARRSDNKISCF 39
           C  T M ND LP   F N RVT  +SD   SCF
Sbjct: 192 CECTSMGNDCLPSKVFVNKRVTECKSDYNTSCF 224


>SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)
          Length = 351

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 354 GNNESLVCGVFPNQDGTFTAMTYTKSKTFKTETVRADGWRSTQ*AN 217
           G++E+     F   DG    MT T S+  +TE+    GW +T   N
Sbjct: 22  GDDETTPLIPFDPDDGESIPMTSTSSRGARTESKSCKGWETTDDPN 67


>SB_47724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = -1

Query: 380 FAKCKKSTSATTNPWCAACSPTRMERSLP*RIPKAKHLKPKLCAPMVGEAHSKLTIKTST 201
           F+ C+   +   +P    C  +    + P + PK + L+P+LC+P+V    + L    S 
Sbjct: 34  FSSCRNKVNRDMHPKGKICIASFENFTFPWQ-PK-RRLRPQLCSPIVQGIEAYLEALISR 91

Query: 200 PAVPE*LHK 174
              P  LH+
Sbjct: 92  TCYPLTLHR 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,792,620
Number of Sequences: 59808
Number of extensions: 500343
Number of successful extensions: 1049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)