Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0517.Seq
         (680 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022536-1|AAY54952.1|  417|Drosophila melanogaster IP11858p pro...    29   7.8  
AF145629-1|AAD38604.1|  985|Drosophila melanogaster BcDNA.GH0558...    29   7.8  
AE014297-3773|AAF56448.1|  417|Drosophila melanogaster CG13659-P...    29   7.8  

>BT022536-1|AAY54952.1|  417|Drosophila melanogaster IP11858p
           protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 379 SQNAKNRPRQQRIPGVRRVPQPGWNVHCHDVYQKQNI*NRN 257
           S + K+R R+  +   R  PQPG+NV CH  +  +N+  +N
Sbjct: 233 SLHFKDRLRET-MQEYRNNPQPGYNVLCHADFHSRNMMFKN 272


>AF145629-1|AAD38604.1|  985|Drosophila melanogaster BcDNA.GH05582
           protein.
          Length = 985

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -1

Query: 323 SPTRMERSLP*RIPKAKHLKPKLCAPMVGEAHS 225
           SP  ++RS   + PK KHLKPK  AP  GE  S
Sbjct: 574 SPLLVKRSPADKPPK-KHLKPKESAPAKGEKTS 605


>AE014297-3773|AAF56448.1|  417|Drosophila melanogaster CG13659-PA
           protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 379 SQNAKNRPRQQRIPGVRRVPQPGWNVHCHDVYQKQNI*NRN 257
           S + K+R R+  +   R  PQPG+NV CH  +  +N+  +N
Sbjct: 233 SLHFKDRLRET-MQEYRNNPQPGYNVLCHADFHSRNMMFKN 272


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,104,013
Number of Sequences: 53049
Number of extensions: 727501
Number of successful extensions: 1738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)