Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0517.Seq
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    28   0.072
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.7  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   3.6  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   3.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   8.2  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 0.072
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -3

Query: 387 CEIRKMQKIDLGNNESLVCGVFPNQDGTF---TAMTYTKSKTFKTETVRADGW 238
           CE+     + +G+NE     ++ N D +F   T+ T+     + T T+  + +
Sbjct: 193 CEVNGSTLVYIGDNEGFALIIYNNSDNSFQRLTSSTFASDPRYTTFTINGESF 245


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 187 SGTAGVDVLIVSLLCASPTIGAHSFGFKCFAFG 285
           SGTA +DV    ++ A+  +   S  ++  AFG
Sbjct: 171 SGTATLDVYNADIMAATSNVIIASMQYRVGAFG 203



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 75  NPVMKKLERKGIIQHQSDSANCSY 146
           +PV + L R+GI+Q  + +A  SY
Sbjct: 265 SPVTRGLVRRGILQSGTLNAPWSY 288


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 187 SGTAGVDVLIVSLLCASPTIGAHSFGFKCFAFG 285
           SGTA +DV    ++ A+  +   S  ++  AFG
Sbjct: 171 SGTATLDVYNADIMAATSNVIIASMQYRVGAFG 203



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 75  NPVMKKLERKGIIQHQSDSANCSY 146
           +PV + L R+GI+Q  + +A  SY
Sbjct: 265 SPVTRGLVRRGILQSGTLNAPWSY 288


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 312 DGTFTAMTYTKSKTFKTETVRADGWRSTQ 226
           D  F  +T  +  TFKTET   D  + T+
Sbjct: 76  DRKFQTVTSIEGNTFKTETQVNDSLKVTR 104


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 312 DGTFTAMTYTKSKTFKTETVRADGWRSTQ 226
           D  F  +T  +  TFKTET   D  + T+
Sbjct: 78  DRKFQTVTSIEGNTFKTETQVNDSLKVTR 106


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 66  PCRNPVMKKLERKGIIQHQSD 128
           P   P + K   K  I+HQSD
Sbjct: 5   PVYRPTIVKKRTKKFIRHQSD 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,495
Number of Sequences: 438
Number of extensions: 4010
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)