Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0517.Seq
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro...    31   0.93 
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro...    31   0.93 

>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400) (1 below
           cutoff); similar to phytochrome A supressor spa1
           (GI:4809171) [Arabidopsis thaliana]
          Length = 794

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 360 DLGNNESLVCGVFPNQDGTF--TAMTYTKSKTFKTETVRADG 241
           DL N+ +LVC +  ++DG F  TA    K K F+ E++  DG
Sbjct: 479 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG 520


>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400) (1 below
           cutoff); similar to phytochrome A supressor spa1
           (GI:4809171) [Arabidopsis thaliana]
          Length = 794

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 360 DLGNNESLVCGVFPNQDGTF--TAMTYTKSKTFKTETVRADG 241
           DL N+ +LVC +  ++DG F  TA    K K F+ E++  DG
Sbjct: 479 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG 520


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,807
Number of Sequences: 28952
Number of extensions: 330742
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)