Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0516.Seq
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   1.3  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   9.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.0  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.0  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 432 GATTFTVIPRDATSRAS 482
           G  TFT +  DAT RA+
Sbjct: 105 GTATFTAVAADATKRAT 121


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 318 LHSWHPTKQLTSR 280
           LHSW  T  LTSR
Sbjct: 107 LHSWLGTGLLTSR 119


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 124 GKTCRDLVANFS 89
           G TC DLV +FS
Sbjct: 234 GGTCHDLVNSFS 245


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 345 PRRPAGTCARIPARWSALSA 404
           PR+PA T A  P R SA  A
Sbjct: 919 PRQPAETHAGSPCRNSASPA 938


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = -2

Query: 487 KSLAREVASRGITVNVVAPGFIETDMTRALSADQRAGILAQVPAGR 350
           +S A  ++S G+T    AP    T      S    A     +PA R
Sbjct: 16  QSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKR 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,234
Number of Sequences: 336
Number of extensions: 2782
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)