Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0516.Seq
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 71 1e-13
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 68 8e-13
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 58 6e-10
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 51 9e-08
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 50 2e-07
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 41 1e-04
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 28 0.76
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|... 27 1.8
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 4.1
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 25 7.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 7.1
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 25 7.1
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 9.4
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 9.4
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 70.5 bits (165), Expect = 1e-13
Identities = 32/86 (37%), Positives = 50/86 (58%)
Frame = -2
Query: 511 EAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSADQRAGILAQVPAGRLGGAQE 332
+ + F++ L+ + A GI VN VAPG I T + + ++ + QVP GR+G E
Sbjct: 196 KGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTPLVSSTFPKEKIELSDQVPLGRMGQPVE 255
Query: 331 ISNAVAFLASDEAAYITGETLHVNGG 254
+++ FLA + Y+TG+TLH NGG
Sbjct: 256 VASCYLFLACSDGGYMTGQTLHPNGG 281
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 68.1 bits (159), Expect = 8e-13
Identities = 39/87 (44%), Positives = 53/87 (60%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSADQRAGILAQVPAGRLGGAQ 335
++AGL F+K LA EVAS+GI VN ++PG+++T M LS+ RA +VP GRL
Sbjct: 154 SKAGLESFTKVLAAEVASKGIRVNAISPGYVDTPM---LSSQIRAIAEKKVPIGRLASTD 210
Query: 334 EISNAVAFLASDEAAYITGETLHVNGG 254
EI +A FL + Y TG L + GG
Sbjct: 211 EIVDACTFLLDNR--YTTGTILPITGG 235
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 58.4 bits (135), Expect = 6e-10
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIET---DMTRALSADQRAGILAQVPAGRLG 344
A+AGL +K+LA GI VNV APG I + D D + P GRLG
Sbjct: 148 AKAGLENLTKALAVRYGPLGIRVNVCAPGTIWSPAWDERFKKHPDVGDRMKRWYPVGRLG 207
Query: 343 GAQEISNAVAFLASDEAAYITGETLHVNGG 254
++++ AV FLA + ++ITG TL+V+GG
Sbjct: 208 TPEDVARAVIFLADSKNSFITGTTLYVDGG 237
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 51.2 bits (117), Expect = 9e-08
Identities = 25/65 (38%), Positives = 37/65 (56%)
Frame = -2
Query: 448 VNVVAPGFIETDMTRALSADQRAGILAQVPAGRLGGAQEISNAVAFLASDEAAYITGETL 269
VN V+PG+I+TD+T + R P R+G E+ A +LASD ++Y TG +
Sbjct: 187 VNSVSPGYIDTDLTLYADENLRKKWKEYTPQARIGLPDELPGAYLYLASDASSYCTGSDI 246
Query: 268 HVNGG 254
V+GG
Sbjct: 247 IVDGG 251
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 50.0 bits (114), Expect = 2e-07
Identities = 35/89 (39%), Positives = 50/89 (56%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSADQRAGILAQVPAGRLGGAQ 335
++AG+I KSLA E + VN V+PG+ +DMT + P R G A+
Sbjct: 175 SKAGVIQLIKSLAVEWR-KFARVNCVSPGYTTSDMTGGKFHKEWE---PYTPFERNGLAK 230
Query: 334 EISNAVAFLASDEAAYITGETLHVNGGCT 248
EI++A +LASD A+Y +G L V+GG T
Sbjct: 231 EIASAYLYLASDAASYASGTNLIVDGGYT 259
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 1e-04
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = -2
Query: 517 CA-EAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSADQRAGILAQVPAGRLGG 341
CA +A + K+LA E A +N V+PG+ TDM Q VP RLG
Sbjct: 173 CASKAAVRQLCKALAVEWAEFA-RINSVSPGYFATDMPGYEFLKQWE---PYVPFKRLGL 228
Query: 340 AQEISNAVAFLASDEAAYITGETLHVNGGCT 248
E+ +LAS+ ++++TG L V+GG T
Sbjct: 229 TPELRGTYLYLASNASSFVTGLDLIVDGGYT 259
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 28.3 bits (60), Expect = 0.76
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = -2
Query: 490 SKSLAREVASRGITVNVVAPGFIETD-MTRALSADQRAGILAQVPAG--RLGGAQEISNA 320
S+ L R+ RG+ VV PG+I D + A++ D L ++ G LG I+N
Sbjct: 1188 SEYLVRQAGLRGLRGVVVRPGYILGDSKSGAINTDD---FLVRMVKGCIELGLYPNINNT 1244
Query: 319 VAFLASDEAA-YITGETLHVNGG 254
V + +D A +T H G
Sbjct: 1245 VNMVPADHVARVVTASAFHPEQG 1267
>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 15 FDSAHTLKFPIKTRFRDGFRSV*NVEKFATKS 110
F+ +H +FP+KTR ++++ N+ F TKS
Sbjct: 127 FEGSHIFEFPVKTRL---YQNLQNLNIFFTKS 155
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 307 PGMQPRWRFPVRRRGDPQEPAPGYPHAGQRSAHVSCP 417
PG P W F ++R G P P YP + V+CP
Sbjct: 348 PGAPPPWLFAMQRYG----PPPSYPDL--KIPGVNCP 378
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 7.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 1 FLTRSSIVLILLNFLSKLAFAMVFVVYKMLKNLQLNPGRSYHDFTLF 141
FL+RSSI + +L LA ++ + L SYH F LF
Sbjct: 279 FLSRSSISFFTVPYLRTLAITQFIILLFTILQSALYLTSSYH-FVLF 324
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 348 RRPAGTCARIPARWSALSARVMSVSIKPGATTFTVIPRD 464
++ A T RI R +S ++MS + ++F +IP D
Sbjct: 889 KKIAATGGRIDNRSDLISKQIMSRKVFINCSSFFIIPND 927
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 247 WSDRDLHKMLMLRAVCVV 194
WSD+DLH +L C+V
Sbjct: 260 WSDKDLHHILGKFGCCIV 277
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 352 DPQEPAPGYPHAGQRSAH 405
DP+EP+P + AG +S +
Sbjct: 1178 DPEEPSPEFSFAGAKSTY 1195
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 523 VRCA-EAGLIGFSKSLAREVASRGITVNVVAPGFIETDMT 407
V C+ ++ L F+ +L +E I + V PG +ET+ +
Sbjct: 157 VYCSTKSALAQFTSALRKETIDTRIRIMEVDPGLVETEFS 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,857
Number of Sequences: 5004
Number of extensions: 41141
Number of successful extensions: 111
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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