Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0516.Seq
(533 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58583| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 2e-15
SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 6e-14
SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45) 73 1e-13
SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34) 67 7e-12
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07) 62 2e-10
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10) 61 6e-10
SB_6559| Best HMM Match : adh_short (HMM E-Value=4.3) 59 3e-09
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_24643| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_24642| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_20643| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08) 31 0.78
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 30 1.0
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27) 29 1.8
SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09) 29 2.4
SB_3900| Best HMM Match : DUF1070 (HMM E-Value=1) 29 2.4
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_12716| Best HMM Match : E3_binding (HMM E-Value=9.7) 28 5.5
SB_44917| Best HMM Match : DUF156 (HMM E-Value=3) 27 7.3
SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_59268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43) 27 9.6
>SB_58583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 79.0 bits (186), Expect = 2e-15
Identities = 41/87 (47%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = -2
Query: 502 LIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSADQ--RAGILAQVPAGRLGGAQEI 329
L+G +K+LA E A GI VN VAPG I+T + AL ++ + ++P RLG ++EI
Sbjct: 46 LLGLTKALADECADIGIRVNCVAPGVIKTRFSAALWKNEAMHQKVKERIPMKRLGTSEEI 105
Query: 328 SNAVAFLASDEAAYITGETLHVNGGCT 248
AV+FL SD+A+YITGET+ + GG T
Sbjct: 106 GGAVSFLCSDQASYITGETIVIGGGMT 132
>SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 74.1 bits (174), Expect = 6e-14
Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 6/97 (6%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTR----ALSADQRA--GILAQVPAG 353
++A +IGF+K++A + ++GI VN V PG I T+ + + Q+A LA+ P G
Sbjct: 160 SKAAVIGFTKAIAADYITKGIRVNAVCPGTIYTESLQYRIDSTPDPQKALADFLARQPTG 219
Query: 352 RLGGAQEISNAVAFLASDEAAYITGETLHVNGGCTWS 242
R G +E++N V FLASDE+++ITG+ + V+GG WS
Sbjct: 220 RFGKPEEVANVVVFLASDESSFITGQCITVDGG--WS 254
>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
Length = 620
Score = 72.9 bits (171), Expect = 1e-13
Identities = 37/86 (43%), Positives = 53/86 (61%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSADQRAGILAQVPAGRLGGAQ 335
++AG+ G +K A E+A GI N + PGFI+T MTR + A I +P GR G
Sbjct: 424 SKAGVEGLTKVCAIELARFGIRCNAILPGFIDTPMTRKVPAHITEQIKHFIPLGRFGQPS 483
Query: 334 EISNAVAFLASDEAAYITGETLHVNG 257
I++ V+FLA DE++YITG ++ V G
Sbjct: 484 NIADVVSFLACDESSYITGASIDVTG 509
>SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34)
Length = 253
Score = 67.3 bits (157), Expect = 7e-12
Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = -2
Query: 481 LAREVASRGITVNVVAPGFIETDMTRALSADQRAGILAQ-VPAGRLGGAQEISNAVAFLA 305
LA+EVA+ GI VN V PG IET++ + +R ++Q VP GR G A+E++ A+ +LA
Sbjct: 176 LAKEVAADGIRVNAVRPGVIETEIHASGGEPERVARVSQSVPMGRGGLAREVAEAILWLA 235
Query: 304 SDEAAYITGETLHVNGG 254
S++A+Y +G L V+GG
Sbjct: 236 SEQASYTSGALLDVSGG 252
>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
Length = 384
Score = 62.5 bits (145), Expect = 2e-10
Identities = 39/88 (44%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPG--FIETDMTRALSADQRAGILAQVPAGRLGG 341
A AG+ + SLA E S GI +N VAPG F ET D I +PA R G
Sbjct: 189 ARAGVHNLTMSLAVEWISNGIRINNVAPGVIFSETAAANYPIPDLFEKIRQTLPAKRCGE 248
Query: 340 AQEISNAVAFLASDEAAYITGETLHVNG 257
+E+S AV FL S A+YITG T+ V+G
Sbjct: 249 TEEVSGAVCFLLSPAASYITGSTIKVDG 276
>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
Length = 289
Score = 60.9 bits (141), Expect = 6e-10
Identities = 33/87 (37%), Positives = 48/87 (55%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSADQRAGILAQVPAGRLGGAQ 335
A+ L G +K++A E+ I VN VAPG I T M +D + +P R G
Sbjct: 192 AKHALGGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATH 251
Query: 334 EISNAVAFLASDEAAYITGETLHVNGG 254
EI++ V +L S+ A Y TG++L V+GG
Sbjct: 252 EIASLVVWLCSEGANYTTGQSLIVDGG 278
>SB_6559| Best HMM Match : adh_short (HMM E-Value=4.3)
Length = 253
Score = 58.8 bits (136), Expect = 3e-09
Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Frame = -2
Query: 478 AREVASRGITVNVVAPGFIETD----MTRAL---SADQRAGILAQVPAGRLGGAQEISNA 320
A+ +A RGITVN V PG+I +D MTRA+ SA+ + P R G +E S
Sbjct: 168 AQVLAPRGITVNAVIPGYIMSDAWHNMTRAMGGVSAEPVQKRIQSTPMRRFGEGREFSQV 227
Query: 319 VAFLASDEAAYITGETLHVNGG 254
V+FL S A++ITG L V+GG
Sbjct: 228 VSFLCSPRASFITGVALPVDGG 249
>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 52.4 bits (120), Expect = 2e-07
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = -2
Query: 490 SKSLAREVASRGITVNVVAPGFIETDMTRAL---SADQRAGILAQVPAGRLGGAQEISNA 320
+KSLA E G+ N +APG IET + + R+ + ++P GR G EI+N
Sbjct: 2 TKSLAAEWGRYGMRFNAIAPGPIETKGAFSRLDPTGAFRSHAIERIPTGRFGEINEIANL 61
Query: 319 VAFLASDEAAYITGE 275
A+L SD A++ITGE
Sbjct: 62 AAYLVSDYASWITGE 76
>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 39.1 bits (87), Expect = 0.002
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGF---------------IETDMTRALSADQRA 380
++ +I +K +A ++A I VN ++PG+ I+T + RA D+
Sbjct: 204 SKGAIISMTKCMALDLAKDHIRVNSLSPGWTYSPEVATILLVTYCIQTQVARAAGDDRAR 263
Query: 379 GILAQVP---AGRLGGAQEISNAVAFLASDEAAYITGETLHVNGG 254
P RLG EI+ A++FL S++A++IT L V+GG
Sbjct: 264 WEPLWGPYHMLNRLGEPAEIAAAISFLCSEDASFITAADLPVDGG 308
>SB_24643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = -2
Query: 520 RCAEAGLIGFSKSLAREVASRGITVNVVAPGFIETDM 410
R +++ L SKS++ ++ GI+V ++ PG+++TDM
Sbjct: 182 RASKSALNIVSKSMSVDLKGDGISVVILHPGWVQTDM 218
>SB_24642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = -2
Query: 520 RCAEAGLIGFSKSLAREVASRGITVNVVAPGFIETDM--TRALSADQRA 380
R +++ L SKS++ ++ GI+V ++ PG+++TDM AL+A + +
Sbjct: 177 RASKSSLNIISKSMSVDLKGDGISVVMLHPGWVQTDMGGPNALTATEES 225
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = -2
Query: 520 RCAEAGLIGFSKSLAREVASRGITVNVVAPGFIETDM--TRALSADQRA 380
R +++ L SKS++ ++ GI+V ++ PG+++TDM AL+A + +
Sbjct: 134 RASKSALNIISKSMSVDLKGDGISVVMLHPGWVQTDMGGPNALTATEES 182
>SB_20643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALS 395
++ +I F++ LA+ + G+T + PG I TD R +S
Sbjct: 48 SKLAIILFTRELAKRLKDTGVTTYSLHPGIIMTDFAREIS 87
>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
Length = 319
Score = 30.7 bits (66), Expect = 0.78
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALS 395
++ +I F++ LA+ + G+T + PG I TD R +S
Sbjct: 205 SKLAIILFTRELAKRLKDTGVTTYSLHPGIIMTDFAREIS 244
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -2
Query: 514 AEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSADQ 386
A+ GL+G S +LA+E A I N +AP + +T+ + +D+
Sbjct: 168 AKLGLVGLSNTLAQEGAKYNIKCNAIAP-VAGSRLTKTVMSDE 209
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 PGMQPRWRFPVRRRGDPQEPAPGYPHAGQRSAH-VSCPFQ*SPEQQRLQ*YRVTQL 471
PG QP+ F R PQ+P + Q S C Q P+QQ LQ YR QL
Sbjct: 633 PGQQPQQSF--RPGQQPQQPFRPEQQSQQSSRPGQQCQPQFLPDQQPLQPYRAIQL 686
>SB_19340| Best HMM Match : EGF_CA (HMM E-Value=3.8e-27)
Length = 888
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Frame = +2
Query: 227 VQIAVRPCTSAVHMQSFTRDVSCFVGCQECNRVGDFLCAAEA---TRRNLRQDTRTLVSA 397
+ I RP S+ + +C + N VG F CA A + QDT
Sbjct: 669 LHIGTRPVESSDTNECADGSHTCSINAACTNTVGSFTCACNAGYTGNGHTCQDTNECTDG 728
Query: 398 QRTCHVRFNKARSNNVYSNT 457
TC + N A +N V S T
Sbjct: 729 SHTCSI--NAACTNTVGSFT 746
>SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09)
Length = 185
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = -2
Query: 481 LAREVASRGITVN-VVAPGFIETDMTRALSADQRAGILAQVPAGR 350
+A VA IT++ +V + T++++A SA+QRAG +V AG+
Sbjct: 135 VATNVAEASITIDGIVYESLVVTEISQA-SAEQRAGRAGRVRAGK 178
>SB_3900| Best HMM Match : DUF1070 (HMM E-Value=1)
Length = 500
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 275 FTRDVSCFVGCQECNRVGDFLCAAEATRRNLRQDTRTLVSAQRTCHVRFNKARSNNVYSN 454
F D C C++C + L + T + + Q +R L+ Q C V S+ VY N
Sbjct: 349 FESDYRCL--CEDCEKPSSRLHDIKTTGKRVAQ-SRALIVRQELCKVVATNEFSDAVYVN 405
Query: 455 TA 460
T+
Sbjct: 406 TS 407
>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 331 FPVRRRGDPQEPAPGY--PHAGQR 396
+ VR+ DP +P+PGY HAG R
Sbjct: 616 YVVRKSSDPGKPSPGYGDSHAGYR 639
>SB_12716| Best HMM Match : E3_binding (HMM E-Value=9.7)
Length = 133
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 505 GLIGFSKSLAREVASRGITVNVVAPGFIET 416
G+ FS +L REV+ G+ V +V PG T
Sbjct: 66 GVEAFSDALRREVSPWGVKVTLVEPGGFHT 95
>SB_44917| Best HMM Match : DUF156 (HMM E-Value=3)
Length = 1198
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 329 DFLCAAEATRRNLRQDTRTLVSAQRTCHVRFNKARSNNV 445
D+ +A+ RRN LV+ Q HVR+ + N+
Sbjct: 49 DWFASAQQRRRNYMHVRYELVATQNIIHVRYELVATQNI 87
>SB_3989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1283
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 334 PVRRRGDPQEPAPGYPHAGQRSAH 405
PVRRR + ++P YP RS H
Sbjct: 417 PVRRREELRQPVSDYPRVPGRSVH 440
>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2437
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 348 SAAHRKSPTRLHSWHPTKQLT 286
S H KSP HSW TK+L+
Sbjct: 555 SRGHIKSPIHKHSWQMTKKLS 575
>SB_59268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 348 RRPAGTCARIPARWSALSARVMSVSIK 428
+RP + ARI W A AR +SVS++
Sbjct: 48 KRPKKSSARIRVFWQASQARYLSVSMR 74
>SB_57080| Best HMM Match : EGF_CA (HMM E-Value=1.4013e-43)
Length = 360
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +2
Query: 290 SCFVGCQECNRVGDFLCAAEA---TRRNLRQDTRTLVSAQRTCHVRFNKARSNNVYSNT 457
+C + N VG F CA A + QDT TC + N A +N V S T
Sbjct: 156 TCSINAACTNTVGSFTCACNAGYTGNGHTCQDTNECADGSHTCSI--NAACTNTVGSFT 212
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +2
Query: 290 SCFVGCQECNRVGDFLCAAEA---TRRNLRQDTRTLVSAQRTCHVRFNKARSNNVYSNT 457
+C + N VG F CA A + QDT TC + N A +N V S T
Sbjct: 197 TCSINAACTNTVGSFTCACNAGYTGNGHTCQDTNECADGSHTCSI--NAACTNTVGSFT 253
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,852,195
Number of Sequences: 59808
Number of extensions: 377571
Number of successful extensions: 1257
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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