Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0516.Seq
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.9  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 137 YFEALPPNNANHFALIITH 193
           YFE LPPN   +  + I H
Sbjct: 80  YFELLPPNRTINSVVYIEH 98


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 283 TGETLHVNGGCTWSDRDLHK 224
           +G T  +   CTWS+ DL K
Sbjct: 379 SGATDKIIRWCTWSEGDLEK 398


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 283 TGETLHVNGGCTWSDRDLHK 224
           +G T  +   CTWS+ DL K
Sbjct: 379 SGATDKIIRWCTWSEGDLEK 398


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 283 TGETLHVNGGCTWSDRDLHK 224
           +G T  +   CTWS+ DL K
Sbjct: 379 SGATDKIIRWCTWSEGDLEK 398


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -2

Query: 484 SLAREVASRGITVNVVAPGFI---ETDMTRALSADQ 386
           +L+REV SR  T+N+   G +   ++ + +A+S  Q
Sbjct: 31  ALSREVISRQATINIGTIGHVAHGKSTIVKAISGVQ 66


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 114 QVLPRFYVILRP 149
           QVLPRF +I RP
Sbjct: 343 QVLPRFLLIERP 354


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 303  DARNATALEISCAPPRRPAGT 365
            D+  ATAL +  APP    GT
Sbjct: 1256 DSSPATALMLQHAPPAYSCGT 1276


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 520 RCAEAGLIGFSKSLAREVASRGITVNVVAPGFIETDMT 407
           +CA   L    +S   +  S  I V  ++P  +ETDMT
Sbjct: 165 KCALTTLTDCLRSELAQCESN-IKVISISPDLVETDMT 201


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 426 KPGATTFTVIPRDATSRASDLLKPIKPASAQ 518
           KP +TT    P     R+  +   I+PA A+
Sbjct: 278 KPNSTTMNGSPGSGGIRSDQMGVKIEPAEAE 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,452
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)