Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0513.Seq
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0722 - 35751490-35754357                                         31   1.2  
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032...    30   2.1  
10_05_0052 - 8586577-8588007                                           29   2.8  
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959...    29   2.8  
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432...    29   4.9  
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903...    28   8.6  
05_01_0125 - 853691-853984,854027-854659                               28   8.6  

>03_06_0722 - 35751490-35754357
          Length = 955

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 532 HKLTPLDDDMRSDTSVPSTSDAPRPS 609
           H+LTP  D ++S T+V +   AP+PS
Sbjct: 92  HRLTPARDRLKSSTAVAAAVPAPKPS 117


>12_02_0918 -
           24299620-24299748,24299890-24300037,24303105-24303280,
           24305870-24305917,24306005-24306116,24306209-24306468
          Length = 290

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 561 HVVV*WSQFMIFIRVAPPLGLCDTQ 487
           HV+V W++ MI  RV+ P+G CD +
Sbjct: 115 HVLVGWARRMIGFRVSTPVGGCDDE 139


>10_05_0052 - 8586577-8588007
          Length = 476

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 354 SRLISGLATGLI*NTRHEENQLQVVPSVTFPLPKSVSK 467
           SRLI  LA G    +  +E+   VVP    PLP + S+
Sbjct: 100 SRLIRDLAVGFFHQSHEDESSSSVVPPRFVPLPSASSR 137


>01_05_0711 -
           24495399-24495595,24495733-24495826,24495906-24495986,
           24496130-24496178,24496281-24496366,24496452-24496679,
           24496797-24496835,24496911-24497000,24497093-24497155,
           24497233-24497302,24497400-24497446,24497544-24497606,
           24497702-24497752,24497851-24497934,24498075-24498139,
           24498243-24498299,24498409-24498526,24498624-24498674,
           24499100-24499186,24499272-24499351,24500663-24500780
          Length = 605

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 401 PCILYQPSSETTYQATFLRLQYQRQQHLVAPPATSKAYSNYS 276
           PC+++ P    T+    +RL  +R    VA   ++K Y N S
Sbjct: 430 PCVIFMPEGSKTHMGGTMRLGSRRTFFEVADCKSAKLYGNVS 471


>05_05_0005 + 21442819-21442916,21443053-21443119,21443226-21443291,
            21443368-21443414,21443480-21443543,21443627-21443707,
            21443781-21443823,21443912-21443961,21444262-21444343,
            21445045-21445120,21445451-21445558,21445782-21445833,
            21445911-21446570,21446652-21448067
          Length = 969

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +1

Query: 490  CVTQTKRGSHSDEDHKLTPLDDDMRSDTSVPSTSDAPRPSTXXXXXXXXXXXXXXXXKQA 669
            C T T+    +    KL   + ++ S+ S+PS S+A R ST                ++A
Sbjct: 834  CSTSTQPSGQTPVRSKLNVPETNLASNISIPSISEAVRLSTAMDVKPYTSEASNGVKEEA 893

Query: 670  ESVAQAVDL 696
                +A+D+
Sbjct: 894  SPAKEALDV 902


>08_02_1147 -
           24688686-24689729,24689875-24690036,24690339-24690368,
           24690713-24690860,24691302-24691489
          Length = 523

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 499 QTKRGSHSDEDHKLTPLDDDMRSDTSVPSTSDAPRPS 609
           + KR  H  +DH     DD+ R      S  D PR S
Sbjct: 235 EEKRSRHDKKDHGQDSEDDERRKRRHATSEDDEPRKS 271


>05_01_0125 - 853691-853984,854027-854659
          Length = 308

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -1

Query: 470 YFGDALRQRKGHRGHHLQLIFFVPCILYQPSSETTYQATFLR 345
           YF  A R R      H +L+FF P    + SS TT+ A  LR
Sbjct: 61  YFILAHRARAAAARRHPELLFFAPPEPRRTSSTTTFYACSLR 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,883,913
Number of Sequences: 37544
Number of extensions: 282480
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)