Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0513.Seq
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)                  32   0.54 
SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   8.8  
SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  

>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
          Length = 313

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 398 CILYQPSSETTYQATFLRLQYQRQQHLVAPPATSKAYSNYSVNKLPVCRCKIRVL 234
           CI+ Q     +Y A FL+++YQ +QH  +   T+ A S      L V    + +L
Sbjct: 120 CIISQVVIVVSYAAVFLKIRYQNKQHRGSRVETANAVSQKKERDLAVTLFIVTIL 174


>SB_41375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 487 LCVTQTKRGSHSDEDHKLTPLDDDMRSDTSVPSTSDAPR 603
           L V    RG+  DE   L P D D     S+P TS +PR
Sbjct: 12  LPVASADRGAGDDETTPLIPFDPD--DGKSIPMTSTSPR 48


>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1050

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 271 INCLFAAAKSGCSSIKVNNKSSCSELTLD 185
           +  ++  + SG  SI V N +SCS +T+D
Sbjct: 42  VQVMYDTSVSGNMSITVTNSTSCSHMTVD 70


>SB_6206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 176 TSTHFCFDDMLYIKLVYFKSYTNKMTNLLIFIFTNNLVNIFK 51
           T   FC    LY+  V    +T+  T  LI    N+LV +FK
Sbjct: 161 TLLEFCLKQ-LYLSFVKNAKFTSPKTKPLITFMQNSLVEVFK 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,779
Number of Sequences: 59808
Number of extensions: 325292
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)