Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0513.Seq
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.7  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.9  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 455 ERLQNIFNNSNCVSHKPRGGATLMKIIN 538
           ERL  I  N N V+H+     +  K IN
Sbjct: 571 ERLNKIGKNPNLVAHREEDLGSESKTIN 598


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 455 ERLQNIFNNSNCVSHKPRGGATLMKIIN 538
           ERL  I  N N V+H+     +  K IN
Sbjct: 539 ERLNKIGKNPNLVAHREEDLGSESKTIN 566


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 341 QYQRQQHLV--APPATSKAYSNYSVNKL 264
           Q Q  QHL    PP  S++YS+Y VN +
Sbjct: 357 QTQSLQHLHYRQPPTLSESYSSY-VNSM 383


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 183 RSRVSSEQLDLLLT 224
           RSRVS EQL++ L+
Sbjct: 30  RSRVSDEQLNMALS 43


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 183 RSRVSSEQLDLLLT 224
           RSRVS EQL++ L+
Sbjct: 30  RSRVSDEQLNMALS 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,614
Number of Sequences: 438
Number of extensions: 3038
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)