Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0513.Seq
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12670.1 68416.m01579 CTP synthase, putative / UTP--ammonia l...    31   0.77 
At1g30820.1 68414.m03768 CTP synthase, putative / UTP--ammonia l...    27   9.5  

>At3g12670.1 68416.m01579 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 591

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 401 PCILYQPSSETTYQATFLRLQYQRQQHLVAPPATSKAYSN 282
           PCI++ P   TT+    +RL  ++    VA   ++K Y N
Sbjct: 429 PCIIFMPEGSTTHMGGTMRLGSRKTYFQVADCKSAKLYGN 468


>At1g30820.1 68414.m03768 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase
           class-I; similar to ESTs gb|AA660762, gb|AA220982,
           dbj|AU008137, gb|AI054783, and gb|AA100804
          Length = 600

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 401 PCILYQPSSETTYQATFLRLQYQRQQHLVAPPATSKAYSNYS 276
           PCI++ P    T+    +RL  ++    V    ++K Y N S
Sbjct: 430 PCIIFMPEGSKTHMGGTMRLGSRKSIFNVKDSKSAKLYENKS 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,812,535
Number of Sequences: 28952
Number of extensions: 227657
Number of successful extensions: 501
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)