Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0509.Seq
         (738 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1698 - 35458500-35458547,35458919-35458988,35459626-354597...    59   4e-09
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26...    48   8e-06
01_03_0214 + 13863123-13863593,13863671-13864132,13864308-138650...    30   2.2  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    30   2.2  
04_01_0048 + 522423-522552,522641-523374,523453-524828,528100-52...    29   2.9  
03_01_0198 - 1578392-1578487,1579060-1579170,1579303-1579396,157...    29   2.9  
02_05_0358 + 28264928-28266049                                         29   2.9  
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536...    29   3.9  
06_01_0160 - 1205454-1205482,1205647-1205732,1205903-1205956,120...    29   3.9  
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140...    29   3.9  
06_03_0262 + 18905352-18905481,18905570-18906003,18906082-189063...    29   5.1  
06_01_1107 + 9120664-9120793,9120882-9121615,9121694-9123069,912...    29   5.1  
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152...    29   5.1  
01_05_0470 + 22531210-22531530,22532423-22532594,22532685-225328...    29   5.1  
12_01_0705 + 6065932-6066061,6066150-6066883,6066962-6067423,606...    28   6.7  
12_02_0227 - 15894357-15894494,15894587-15894655,15894837-158949...    28   8.9  
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744...    28   8.9  
10_02_0079 + 5016115-5016936                                           28   8.9  
04_01_0606 - 7949609-7949822,7949989-7950159,7950242-7951074,795...    28   8.9  

>04_04_1698 -
           35458500-35458547,35458919-35458988,35459626-35459759,
           35460671-35460712,35460786-35460824
          Length = 110

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +3

Query: 264 IGERVWVG-GTKPGQIAYIGETQ-FAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 437
           +G+R  V  G K G + ++G  +    G W G+  DEP+GK+DG V G+R+F+CP+  G 
Sbjct: 28  VGDRCEVEPGAKRGTVKFVGRAEALGRGFWVGVQYDEPLGKHDGMVKGIRFFECPQGHGA 87

Query: 438 FSR 446
             R
Sbjct: 88  IVR 90


>05_01_0038 +
           260080-260380,260852-261022,261764-261810,262266-262412,
           262495-262569,262826-262935,263032-263159,263368-263429,
           263599-263748,263827-263861,264083-264151,264538-264629,
           264718-264794,265434-265532
          Length = 520

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +3

Query: 255 SFIIGERVWVGG--TKPGQIAYIGETQFAPGEWAGIVLDEPI-GKNDGSVAGVRYF-QCP 422
           +F +G+RV   G   + G + Y+G     PG+W G+  D    G++DGS+AG RYF    
Sbjct: 5   AFRLGQRVHAAGDPARVGTVRYLGPVDGHPGDWLGVDWDAGAGGRHDGSLAGRRYFVAAG 64

Query: 423 EKRGVFSRLTRLT 461
           E+   F+R T L+
Sbjct: 65  ERSASFARPTALS 77


>01_03_0214 +
           13863123-13863593,13863671-13864132,13864308-13865038,
           13865121-13865291,13865371-13865629,13866069-13866158
          Length = 727

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 480 HTPHDASPVSMRGACSNDLLPARLVPSGP 566
           H  HDASP   R +C++  +PA  +P  P
Sbjct: 275 HAQHDASPSQHRSSCASTEVPAPGLPVAP 303


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 464 SSEPSQSRKHTSFLWTLKITNACH 393
           SS+   S  H   LWTLK  N+CH
Sbjct: 502 SSKKEVSIVHNIILWTLKFANSCH 525


>04_01_0048 +
           522423-522552,522641-523374,523453-524828,528100-528400
          Length = 846

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 489 HDASPVSMRGACSNDLLPARLVPSGPSRQMEVFAVLSAVR 608
           HDASP   R +C++  +PA  +P  P   ++   V+  +R
Sbjct: 409 HDASPSQHRSSCASTEVPAPGLPIAPLAVVDHIEVIVVIR 448


>03_01_0198 -
           1578392-1578487,1579060-1579170,1579303-1579396,
           1579467-1579591,1580016-1580116,1580589-1580793
          Length = 243

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 532 SFEHAPRIDTGDASCGVCIAKGTLVSRVNRENTPRFSG 419
           +FE A R+D   +  GV   K  L+ R+ REN P   G
Sbjct: 73  AFEKAHRLDPTSSGRGVRQFKTALLQRLERENEPTLRG 110


>02_05_0358 + 28264928-28266049
          Length = 373

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +2

Query: 503 RVDAGSVFERPPSGAARPKRTLS-------PNGSIRSIVSSKMNASISTTTNGDIRTGDR 661
           RV+ GS+  R  S AA  +RT S        +  + ++VS     + + +T G +     
Sbjct: 230 RVEIGSISNRRSSAAADDRRTYSLGSFDYRVDEEVEAVVSRIARPAAAKSTTGSVTPAPG 289

Query: 662 VIVSSSRGSKSWV 700
             ++ + GS+ W+
Sbjct: 290 EALAEAAGSRGWL 302


>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
            21354741-21356354,21356446-21356553,21356649-21357509,
            21357586-21357632,21358591-21358697,21359512-21359630,
            21359706-21359915,21360412-21360693,21360820-21360952,
            21361256-21361413,21362564-21362647,21362949-21363035
          Length = 1654

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 118  ENHKMPVETKISFSDGSSTDTLRKLSD 198
            E ++ P  T +S SDG+STD + K SD
Sbjct: 1237 EANQKPENTTLSCSDGTSTDVIDKQSD 1263


>06_01_0160 -
           1205454-1205482,1205647-1205732,1205903-1205956,
           1206035-1206130,1207332-1207448,1207834-1207952
          Length = 166

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 512 AGSVFERPPSGAARPKRTLSPNGSIRSIVSSKMNASISTTTNGDIRTGDRVIVS 673
           A SV  RPP G+AR +   SP G +  +     ++S S     D +    ++++
Sbjct: 18  AASVLRRPPRGSARREEESSPEGVVGYVELIGGDSSSSAAMGEDTQEAKALMIA 71


>03_06_0572 +
           34812203-34812278,34812485-34813768,34813973-34814049,
           34814299-34814646
          Length = 594

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 400 PATDPSFLPIGSSSTIPAHSPGANCVSPI*AICPGFVPPT 281
           P T+P+  P  +  T+PA +P  N V+P     P   P T
Sbjct: 246 PVTNPTTTPATNPVTVPATNPAMNPVTPGIVTVPSTNPAT 285


>06_03_0262 +
           18905352-18905481,18905570-18906003,18906082-18906303,
           18906381-18906842,18906935-18907755,18907838-18908008,
           18908088-18908347,18908453-18908508,18908786-18908824,
           18909711-18909764
          Length = 882

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 474 AIH-TP---HDASPVSMRGACSNDLLPARLVPSGP 566
           A+H TP   HDASP   R +CS+  +PA  +P  P
Sbjct: 374 AVHPTPRAQHDASPSQHRSSCSSTEVPAPGLPVAP 408


>06_01_1107 +
           9120664-9120793,9120882-9121615,9121694-9123069,
           9123152-9123322,9123402-9123702
          Length = 903

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 447 LTRLTRVPFAIHTP---HDASPVSMRGACSNDLLPARLVPSGPSRQMEVFAVLSAVR 608
           + R+T +P    TP   HDASP   R +C++  +PA  +P  P   ++   V+  ++
Sbjct: 393 IPRVT-IPAVQPTPRVQHDASPSQHRSSCASTEVPAPGLPIAPLAAVDHIEVIVVIQ 448


>03_05_0954 -
           29113938-29114024,29114277-29114444,29115156-29115212,
           29115314-29115369,29115463-29115572,29116142-29116310,
           29116418-29116742,29117378-29117442,29117541-29117712,
           29118191-29118484
          Length = 500

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 157 SDGSSTDT-LRKLSDDLSRKHLSDHSVILTEDTEA 258
           S G +  T LRK++DD+  K+ SD S +++  T A
Sbjct: 278 SSGKAVTTGLRKVTDDMKTKNRSDRSGVVSSSTAA 312


>01_05_0470 +
           22531210-22531530,22532423-22532594,22532685-22532820,
           22532913-22533126,22533295-22533438,22533528-22533635,
           22533724-22533820,22533904-22534035,22534188-22534320,
           22534439-22534604
          Length = 540

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 572 ARGSAWDEPRRKEVVRTRSPHRHGRCIVRCVYSE 471
           A G+  +   R+ V R   P R GR +VRCV +E
Sbjct: 24  AAGAGAEGRSRRVVPRAVEPRRRGRWMVRCVATE 57


>12_01_0705 +
           6065932-6066061,6066150-6066883,6066962-6067423,
           6067505-6068337,6068420-6068590,6068670-6068919,
           6069367-6069405,6069598-6069672
          Length = 897

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 489 HDASPVSMRGACSNDLLPARLVPSGP 566
           HDASP   R +C++  +PA  +P  P
Sbjct: 409 HDASPSQHRSSCASTEVPAPALPIAP 434


>12_02_0227 -
           15894357-15894494,15894587-15894655,15894837-15894902,
           15895130-15895219,15895312-15895408,15896449-15896771
          Length = 260

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 545 AARPKRTLSPNGSIRSIVSSKMNASISTTTNGDIRTGDRVIVSSSR 682
           A R  R  +P   + ++ SS  ++S STTT  D+    R   SSSR
Sbjct: 19  AGRGARRRNPLPPVPTVPSSSSSSSASTTTTRDLAAFARGSSSSSR 64


>12_02_0096 -
           13573612-13573632,13573846-13573884,13574160-13574493,
           13574660-13574830,13574913-13575730,13575812-13576114,
           13576352-13577085,13577174-13577303
          Length = 849

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 474 AIH-TP---HDASPVSMRGACSNDLLPARLVPSGP 566
           A+H TP   HDASP   R +C++  +PA  +P  P
Sbjct: 347 AVHPTPRAQHDASPSQHRSSCASTKVPAPGLPIAP 381


>10_02_0079 + 5016115-5016936
          Length = 273

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 376 PIGSSSTIPAHSPGANCVSPI*AICPGFVPPTQTRSPI 263
           P    + IPA +P AN +S      P   PP  T  P+
Sbjct: 22  PTNPRNAIPAANPAANPISGAAHSAPANAPPPATECPV 59


>04_01_0606 -
           7949609-7949822,7949989-7950159,7950242-7951074,
           7951156-7951476,7951696-7952166
          Length = 669

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 489 HDASPVSMRGACSNDLLPARLVPSGP 566
           HDASP   R +C++  +PA  +P  P
Sbjct: 231 HDASPSQHRSSCASTEVPAPSLPIAP 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,288,813
Number of Sequences: 37544
Number of extensions: 466718
Number of successful extensions: 1451
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)