Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0509.Seq
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 103 2e-22
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 96 3e-20
SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39) 78 9e-15
SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32) 72 4e-13
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 71 1e-12
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 71 1e-12
SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19) 53 3e-07
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17) 48 1e-05
SB_8354| Best HMM Match : Pkinase (HMM E-Value=6.3e-15) 41 0.001
SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37) 37 0.015
SB_47332| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12) 28 9.1
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 28 9.1
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5) 28 9.1
SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25) 28 9.1
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 103 bits (247), Expect = 2e-22
Identities = 46/83 (55%), Positives = 62/83 (74%)
Frame = +3
Query: 258 FIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 437
F +G+RV V TKPG IA++GET+FA G+WAGI+LD+P GKNDGSVAG +YF+C GV
Sbjct: 156 FQVGDRVLVNNTKPGVIAFLGETKFAKGDWAGIILDDPTGKNDGSVAGEKYFECKPLHGV 215
Query: 438 FSRLTRLTRVPFAIHTPHDASPV 506
F++L ++T+V +P SPV
Sbjct: 216 FTKLEKITKVNQVTESP--GSPV 236
Score = 89.0 bits (211), Expect = 3e-18
Identities = 38/70 (54%), Positives = 52/70 (74%)
Frame = +3
Query: 255 SFIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRG 434
S IG+RV V G K G + Y+G T+FA GEWAG+ LDEP+GKNDG+VAG RYFQC + G
Sbjct: 241 SLEIGDRVVVSGNKIGTLRYVGTTEFAKGEWAGVELDEPLGKNDGAVAGTRYFQCIQGYG 300
Query: 435 VFSRLTRLTR 464
+F+ + ++ +
Sbjct: 301 LFAPVHKVIK 310
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 95.9 bits (228), Expect = 3e-20
Identities = 38/67 (56%), Positives = 52/67 (77%)
Frame = +3
Query: 264 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFS 443
IGERV++GGTK G + + G T+FA GEW G+ LD+P+GKNDGSV GV+YFQC G+F+
Sbjct: 392 IGERVYIGGTKSGVLRFCGRTEFASGEWVGVELDQPVGKNDGSVDGVQYFQCEPNHGIFA 451
Query: 444 RLTRLTR 464
+++TR
Sbjct: 452 PASKVTR 458
Score = 90.6 bits (215), Expect = 1e-18
Identities = 40/71 (56%), Positives = 50/71 (70%)
Frame = +3
Query: 258 FIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGV 437
F IGE V V G KPG + +IG+TQFA G W GI L P+GKNDGSV GVRYF C + GV
Sbjct: 521 FQIGEHVLVAGQKPGIVQFIGQTQFASGWWLGIELSNPVGKNDGSVGGVRYFTCKPRFGV 580
Query: 438 FSRLTRLTRVP 470
F+ + ++T+ P
Sbjct: 581 FAPVAKVTKNP 591
>SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)
Length = 246
Score = 77.8 bits (183), Expect = 9e-15
Identities = 37/65 (56%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Frame = +3
Query: 264 IGER--VWVGGTKP--GQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKR 431
+G R V V G P G++ ++G T F PG W GI DEP+GKNDGSVAG RYFQCP K
Sbjct: 160 VGSRCEVKVAGAPPKRGEVMFVGTTDFKPGYWVGIKYDEPLGKNDGSVAGKRYFQCPPKY 219
Query: 432 GVFSR 446
G F R
Sbjct: 220 GGFVR 224
>SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)
Length = 640
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/61 (52%), Positives = 41/61 (67%)
Frame = +3
Query: 264 IGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFS 443
+G + VG K G I +IG T+F+PG W G+ LD+ GKNDGSV+GVRYF C + G F
Sbjct: 472 VGMAIEVGKGKTGVIRFIGATEFSPGPWVGVELDKAGGKNDGSVSGVRYFACKPRFGSFV 531
Query: 444 R 446
R
Sbjct: 532 R 532
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 70.9 bits (166), Expect = 1e-12
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = +3
Query: 294 KPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVF 440
+ G + + G T F+PGEW GIVLD+ GKNDGSV GVRYF C + G+F
Sbjct: 250 RTGLLQFTGTTHFSPGEWCGIVLDDACGKNDGSVKGVRYFDCKQDHGIF 298
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/63 (47%), Positives = 41/63 (65%)
Frame = +3
Query: 300 GQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFSRLTRLTRVPFAI 479
G +AY+G TQFA G+W G+VLDE GKNDG+V G YF C + G+F R +++ +
Sbjct: 4 GTVAYVGATQFATGKWIGVVLDEKKGKNDGTVQGKEYFSCEDGYGIFVRQSQIIVLDSNT 63
Query: 480 HTP 488
TP
Sbjct: 64 STP 66
>SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19)
Length = 898
Score = 52.8 bits (121), Expect = 3e-07
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 258 FIIGERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGK-NDGSVAGVRYFQCPEKRG 434
F G+RV + G G + ++G T+ G+W GI +D+ + + ++GS G++YF C K G
Sbjct: 64 FNTGDRVHLRGYI-GTVKFVGATELGQGDWVGIEMDKELNQGHNGSYEGIQYFFCKPKHG 122
Query: 435 VFSR 446
VF+R
Sbjct: 123 VFAR 126
>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
Length = 560
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 267 GERVWVGGTKPGQIAYIGETQFAPGEWAGIVLD--EPIGKNDGSVAGVRYFQCPEKRGVF 440
G+RV V G G + ++G T G W GI LD +P G N GS YFQC K G+F
Sbjct: 86 GDRVHVRGYV-GTVKFVGCTSLGEGVWVGIALDKQQPQG-NSGSHQETSYFQCQPKHGLF 143
Query: 441 SR 446
+R
Sbjct: 144 AR 145
>SB_8354| Best HMM Match : Pkinase (HMM E-Value=6.3e-15)
Length = 280
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +3
Query: 339 GEWAGIVLDEPI-GKNDGSVAGVRYFQC 419
GEW G+ D+P GK+DGS+ GV+YF+C
Sbjct: 188 GEWYGVEWDDPKRGKHDGSIDGVKYFEC 215
>SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)
Length = 947
Score = 37.1 bits (82), Expect = 0.015
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +3
Query: 300 GQIAYIGETQFAPGEW-AGIVLDEP-IGKNDGSVAGVRYFQCPEKRGVFSRLTRLTR-VP 470
G I +IG+ + AG+ L+E G +DG+ G RYF+CP RG F L +
Sbjct: 572 GVIRWIGQLAELKNKLVAGLELEEEQSGCSDGTFKGKRYFECPPGRGFFVLLKYCRKDSR 631
Query: 471 FAIHTPHDASPVSMRGACSNDLLPAR-LVPSGPS 569
F + +P D S + S D ++P PS
Sbjct: 632 FELDSPMDTPGRSAKNFGSMDCPSIEGIIPPPPS 665
Score = 36.7 bits (81), Expect = 0.020
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +3
Query: 276 VWVGGTKPGQIAYIGETQFAPGEWAGIVLDEPIGKNDGSVAGVRYFQCPEKRGVFSRLTR 455
VW G P + + P + G E +G +DG+ RYF CPE GVF L +
Sbjct: 135 VWFKGPLPTHDGTMFGVELTPNKPKG---SEQLGTSDGTFREKRYFTCPENCGVFVALDK 191
Query: 456 L 458
+
Sbjct: 192 I 192
>SB_47332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 270 ERVWVGGTKPGQIAYIGETQFAPGEWAGIVLDE 368
E +W G G + Y G PGEW GI LD+
Sbjct: 14 EVLWRGEVCKGAVRYTGMLVAKPGEWIGIELDD 46
>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 348 AGIVL--DEPIGKNDGSVAGVRYFQCPEKRGVFSRL 449
AG+ L D+ +G N G+ GVRYF KRG F RL
Sbjct: 519 AGVELSTDDRLGTN-GTYRGVRYFVTTPKRGYFFRL 553
>SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)
Length = 460
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 263 YW*TCLGRRYEAWTNR--LYWRNAVCSRRVGWDSTRRANW*KRWISGRRSLFSMS 421
YW C G + WT R LY V V S A W R++ R+ SMS
Sbjct: 111 YWLQCTGDKLRRWTRRGDLY---LVLYSIVDRSSFDEARWIARYVKDHRNTDSMS 162
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 542 GAARPKRTLSPNGSIRSIVSSKMNASISTTTNGDIRTGDRVIVSSSRGSKSWVI 703
G A+P T S G I S++ S ++ G I +GD +S+RGS V+
Sbjct: 687 GPAKPDDTPSGTGEIGPAGSTRFTDSDKNSSRGTIESGD-TDKNSNRGSSENVL 739
>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
Length = 561
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 533 PPSGAARPKRTLSPNGSIRSIVSSKMNASI---STTTNGD 643
PPS ARPK T S + R+ SK+N S+ + TT GD
Sbjct: 297 PPSNNARPKTTKS---TTRTASVSKINGSVARRNLTTKGD 333
>SB_15922| Best HMM Match : DEAD (HMM E-Value=0.25)
Length = 409
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 9 TQVATTNYTPRYTHKL--RFPNFKSRTN 86
T++ TT ++P YTH L R P SR N
Sbjct: 126 TKLYTTGFSPSYTHSLRSRTPGVSSRLN 153
>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 533 PPSGAARPKRTLSPNGSIRSIVSSKMNASI---STTTNGD 643
PPS ARPK T S + R+ SK+N S+ + TT GD
Sbjct: 699 PPSNNARPKTTKS---TTRTASVSKINGSVARRNLTTKGD 735
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,482,404
Number of Sequences: 59808
Number of extensions: 524232
Number of successful extensions: 1579
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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