Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0508.Seq
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    25   0.59 
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    23   2.4  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   4.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   5.5  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   9.6  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 401 AFIPVWTPTVLFVV 360
           AF  +WTP V+FVV
Sbjct: 115 AFFLLWTPAVIFVV 128


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 181 GWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELCCQLNRVGKHLPQPISLR 29
           GWS+D    +       D+ NV K E L    + C L + G+  P  + L+
Sbjct: 17  GWSEDTTHKYTTKYDNIDLENVVKNERLLKSYVDCLLEK-GRCSPDGLELK 66


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 145 GEFTRDMGNVEKIELLPYHE 86
           G+FT +MG +   EL  +H+
Sbjct: 282 GDFTENMGTLGYNELCEFHK 301


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +1

Query: 439 LSLQDCFTAGCGNAAAGSVHKV-AKVTT 519
           +S   C +AGC    A   HK    +TT
Sbjct: 345 ISFMACSSAGCSQKVAEERHKTDINITT 372


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 328 YFQQFINHRIVTT 366
           Y  Q INHR+V T
Sbjct: 324 YSLQLINHRVVFT 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,188
Number of Sequences: 336
Number of extensions: 2804
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)