Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0508.Seq
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    28   0.82 
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    27   2.5  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   5.8  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   7.6  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   7.6  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 420 RACKKEGIHTCLDTNGFVRRYDPVIDE 340
           RA +  G++T +  N FV   DP++DE
Sbjct: 86  RASQDRGVNTLIGANLFVGNLDPLVDE 112


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 301 TDERRDPPKSGWSFQP--RTLEFAKYLANKNVK 209
           +D R+DPP+ GW   P  R +   + + NKN K
Sbjct: 143 SDVRKDPPRKGWKKGPYGRAIVVLR-MYNKNTK 174


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 96  GRSSIFSTLPISRVNSPRRCAESSSSDQPG 185
           GRSS   T P SR  SP R  ++     PG
Sbjct: 106 GRSSPLYTQPRSRATSPSRVRQADRFAAPG 135


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 419 RNQSRTNSACRIASPPDAVTPPPEAFIKWRRSPLPSSN 532
           RN S+  ++    SPP +V   P AF   + S  PSS+
Sbjct: 154 RNDSKRQASSFRRSPPSSVHMKPSAFNGRKVSRRPSSS 191


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 402 GIHTCLDTNGFVRRY 358
           G+ TCL  NGF+++Y
Sbjct: 364 GLKTCLVVNGFMKKY 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,412
Number of Sequences: 5004
Number of extensions: 49306
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)