Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0508.Seq
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0177 + 1383074-1383223,1383430-1383673,1383792-1383859,138... 31 0.48
03_05_0252 - 22403504-22404676 31 0.48
12_02_1053 + 25704123-25704313,25704378-25704812,25705760-257059... 30 1.5
07_03_1719 - 28987426-28987851,28987954-28988231,28988329-28988530 29 1.9
03_06_0494 + 34319825-34320094 29 1.9
11_01_0759 + 6369149-6369231,6369765-6371556 29 3.4
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 29 3.4
03_01_0529 - 3968813-3968983,3969060-3969116,3969215-3969526,396... 28 5.9
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 27 7.7
03_06_0091 + 31577363-31577562,31577627-31577749,31578580-315786... 27 7.7
03_02_0812 - 11439258-11439409,11439537-11439612,11439860-114400... 27 7.7
>06_01_0177 +
1383074-1383223,1383430-1383673,1383792-1383859,
1384044-1384091,1384188-1384312,1384461-1384569,
1384785-1384826
Length = 261
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 256 VGNSNQILVDLVVHLLEIEHYQVGYFQQFINH 351
VGN N+ L DL++ LE Y+ G+F + NH
Sbjct: 179 VGNENRGLSDLLISYLETWKYKSGFFPRKANH 210
>03_05_0252 - 22403504-22404676
Length = 390
Score = 31.5 bits (68), Expect = 0.48
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 492 ASGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEV 328
A GGG GG A A D+ RA + + L+ GFV + +D L++V
Sbjct: 23 AGGGGGGGGGGAAAAAAGGGGDFGRAVARAAVARMLEAAGFVCAHRSAVDALVDV 77
>12_02_1053 +
25704123-25704313,25704378-25704812,25705760-25705913,
25706143-25706229
Length = 288
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 204 HTFTFLFARYLANSSVRGWKLQPDFGGSR---RSSVRDRALPGRVLPAVHQSPDRNDEQN 374
H + +L S+VRG PD G R R R R+L GR+ H S D Q
Sbjct: 55 HPMLYKQYEWLEPSAVRGPNEDPDGDGGRPHPRYQSRSRSLWGRITGRSHSSERGGDGQG 114
Query: 375 RWCPDRYEC 401
+ D C
Sbjct: 115 FYNEDTRGC 123
>07_03_1719 - 28987426-28987851,28987954-28988231,28988329-28988530
Length = 301
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 420 RACKKEGIHTCLDTNGFVRRYDPVIDELLEVPDLV 316
R CK E C +G DPV+DELL PD +
Sbjct: 260 RFCKAEASTACF--SGADADVDPVVDELLSFPDSI 292
>03_06_0494 + 34319825-34320094
Length = 89
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -2
Query: 325 RPGNARSLTDERRDPPKSGWSFQPRTLEFAKYLA 224
RP L ERR+PPK G+ FQP LE LA
Sbjct: 47 RPVALPELGKERREPPKGGY-FQPPDLESLFVLA 79
>11_01_0759 + 6369149-6369231,6369765-6371556
Length = 624
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 37 KSAEEDA-FRRDLIDSIIRGRGEARFSQR----CPYHG*IHRGDALNRHRQTSLGQQRSG 201
KSAEE F I G RF++R C HG +G+ + + + RSG
Sbjct: 364 KSAEEHTDFCLAHISRRCMHEGCFRFARRKTDFCSKHGGGKKGETETHKKSSRSAESRSG 423
Query: 202 STPSHFCSPDI*RTPAC 252
+T +H S ++P C
Sbjct: 424 ATITHVSSGKNCKSPGC 440
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 211 KVWIRYVVVPGWSDDDDSAHRLGEFTRDMG-NVEKIELL 98
K+ ++Y V+PGW DD S + VE+IE L
Sbjct: 449 KIKVKYEVLPGWEDDISSVRNYSDLPETARLYVERIEEL 487
>03_01_0529 -
3968813-3968983,3969060-3969116,3969215-3969526,
3969606-3970298,3971473-3971763
Length = 507
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -2
Query: 217 NVKVWIRYVVVPGWSDDDDSAHRLGEF----TRDMGNVEKIELLPYH 89
+VK ++Y V+PGW D S E R + +E++ +P H
Sbjct: 447 SVKPMVKYEVLPGWQSDISSVRSYSELPLAAQRYVERIEELVGVPVH 493
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 407 FLQARNQSRTNSACRIA-SPPDAVTPPPEA 493
FLQ + +A IA S PDA TPPP A
Sbjct: 600 FLQRHPTAAAATATAIALSAPDAATPPPAA 629
>03_06_0091 +
31577363-31577562,31577627-31577749,31578580-31578687,
31579084-31579154,31579247-31579500
Length = 251
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 183 GTTT*RIHTFTFLFARYLANSSVRGWKLQPDFGGSRRSSVRDRALPGR 326
GTT + F ++ S RG + P FGGS+ V DR P R
Sbjct: 54 GTTFLKWLAFFAAVGPRVSFGSKRGSPISPFFGGSKAPCVADRDTPTR 101
>03_02_0812 -
11439258-11439409,11439537-11439612,11439860-11440076,
11440150-11440350,11440673-11440872,11440955-11441075,
11441596-11441636,11441714-11441822,11442037-11442281,
11442382-11442496,11442970-11443064,11444279-11444535,
11444780-11444999,11445473-11445556
Length = 710
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 349 HRIVTTNKTVGVQTGMNAFFFAGAEPVTNKLSLQDCFTAGCGNAAAGSVHKVAKVTTSFI 528
+RI G + +NA++ A + K+ DC T G G KV VTT+ +
Sbjct: 610 NRIAPELYEAGGRGPVNAYYLAAKHGIV-KIVSPDCTTRGSGGGEMHVTPKVHLVTTTVV 668
Query: 529 KSS 537
S
Sbjct: 669 LES 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,337,246
Number of Sequences: 37544
Number of extensions: 385430
Number of successful extensions: 1495
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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