Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0508.Seq
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.49 
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 29   2.0  
SB_18754| Best HMM Match : GYR (HMM E-Value=1.5)                       29   2.0  
SB_43670| Best HMM Match : DUF827 (HMM E-Value=0.52)                   28   4.5  
SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)                    28   4.5  
SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     28   6.0  
SB_40409| Best HMM Match : HSBP1 (HMM E-Value=5.3)                     28   6.0  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   28   6.0  
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)             27   7.9  

>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = -2

Query: 148 LGEFTRDMGNVEKIELLPYHELCCQLNRVGKHL 50
           +  F++D GN++  ++LP H+L C LN +GK+L
Sbjct: 858 MNRFSKDTGNMD--DVLP-HDLYCTLNFIGKYL 887


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 209 LHIFVRQIFSELQRAGLETPTRFWWI 286
           +H+  R IF +L R  ++TP+ F W+
Sbjct: 835 IHVHQRDIFDDLVRKNIKTPSDFEWL 860


>SB_18754| Best HMM Match : GYR (HMM E-Value=1.5)
          Length = 454

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = +3

Query: 198 RIHTFTFLF----ARYLANSSVRGWKLQPDFGGSRRSSVRDRALPGRVLPAVHQSPDRND 365
           + HTFTF       R ++N  +   ++           ++ R  PG V P V   P RN+
Sbjct: 268 KYHTFTFKLNLRRRRGVSNLDIENEQVTSSSEKRLHPGIKKRVHPGHVEPGVENRPSRNN 327

Query: 366 EQNR 377
            + R
Sbjct: 328 VEKR 331


>SB_43670| Best HMM Match : DUF827 (HMM E-Value=0.52)
          Length = 253

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -3

Query: 480 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTN 376
           GV A+  E +L+ E +RD  +A + + +HT +D++
Sbjct: 129 GVYANSTEKVLRTERLRDSIKALQSKTLHTEIDSS 163


>SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 620

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 374 PLVSRQV*MPSFLQARNQSRTNSACRIASPPDAVTPPPE---AFIKWRRSPLPSSNLQ 538
           P  S  +    FLQ + Q + +    +  PP + TPPP    A +     P+PS+  Q
Sbjct: 428 PTTSLDLLGQEFLQNQKQQQKHKQVVLPLPPASATPPPSSDGALLDLGLDPVPSAPTQ 485


>SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)
          Length = 353

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 247 LEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELCCQLN 68
           L FA++L   N  +W+     P     +D  +RLG  T ++ +VE      Y  +C +L+
Sbjct: 40  LFFARHLQKHNHILWMSPTDRPDLGGKEDDDNRLGLMTDEVESVEFNSSGCYPTVCVELS 99


>SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +1

Query: 385 QTGMNAFFFAGAEPVTNKLSLQDCFTAGCGNAAAGSVHKVAKVTTSFIKSSTVTSLP 555
           +TG + F F+   P+T+        +   G+  + S     K+TT     ST TSLP
Sbjct: 151 ETGCSDFVFSKGVPLTDAYRAPPSSSKSKGHTRSSSYP--GKITTGISHDSTATSLP 205


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 449 RIASPPDAVTPPPEAFIKWRRSPLPSS 529
           +++S PD V   PE  ++ RR P+PSS
Sbjct: 781 QVSSAPDDVDGSPEYSVEVRRFPVPSS 807


>SB_40409| Best HMM Match : HSBP1 (HMM E-Value=5.3)
          Length = 319

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 322 PGNARSLTDERRDPPKSGWSFQ-PRTLEFAKYLANKNVK 209
           P N R L D+R +  K+  SF    TLE A  +A K+V+
Sbjct: 222 PANIRELQDDRTESLKANMSFDLDATLEAAAAVAPKSVQ 260


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 209  LHIFVRQIFSELQRAGLETPTRFWWI 286
            +H+  R IF +L R  + TP+ F W+
Sbjct: 1891 IHVHQRDIFDDLCRMHIRTPSDFEWL 1916


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 452 IASPPDAVTPPPEAFIKWRRSPLPSSNLQR 541
           +A PP   TP P  FI W RS L S  + R
Sbjct: 425 LALPP--WTPTPTDFISWHRSALESDEVSR 452


>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2332

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
 Frame = +3

Query: 117  TLPISRVNSPRRCAESSSSDQPGTTT*RIHTFTFLFARYLANS--SVRGWKLQPDFGGSR 290
            T P SRV++ +   +  S+DQP   T +      L ++ L+ S   ++  +L P    S 
Sbjct: 1148 TRPASRVSAQQISRKPRSNDQPSQATSKT-KLPALRSKPLSGSPPKIQQARLTPRTPSSA 1206

Query: 291  RSSVRDRALPGRVLP---AVHQSPDRNDEQN 374
             S     + P   LP   + HQ+ DR  E N
Sbjct: 1207 FSQNHSTSYPAFKLPPANSSHQAADRLSESN 1237


>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 318 PGRVLPAVHQSPDRNDEQNRWCP-DRYECLLFC 413
           P  V+  V Q P++  EQ + CP + YE +L C
Sbjct: 182 PELVMKIVTQQPEKKLEQPKACPSELYELMLHC 214


>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
          Length = 497

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = -3

Query: 189 LSQAGLTMTIQRIASVNLPV---IWATLRKSSFSPTTNYAVN*IASESIFLSR 40
           L   G+ +TI  +A++ + V   IW+TLR   + PT    V+ + S++I +++
Sbjct: 3   LKTKGVILTIVLLAALLVFVGSQIWSTLRTMKYHPTRGGHVDDVTSDAIRVTK 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,830,562
Number of Sequences: 59808
Number of extensions: 399769
Number of successful extensions: 1122
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)