Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0508.Seq
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003384-8|AAB54242.1|  163|Caenorhabditis elegans Hypothetical ...    29   1.7  
U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z68004-9|CAA91985.2|  120|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    27   7.0  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    27   7.0  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    27   7.0  
AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF003384-8|AAB54242.1|  163|Caenorhabditis elegans Hypothetical
           protein K07B1.6a protein.
          Length = 163

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 142 HRGDALNRHRQTSLGQQRSGSTPSHFCSPDI*RTPACGVGNSNQI 276
           H G++  RHR+    + RS S+ S  CS +   TP CGV  +N +
Sbjct: 64  HMGESRKRHRRGGKKRSRSNSS-SSVCSTNSDITP-CGVEPNNNV 106


>U80452-2|AAK68180.1|  729|Caenorhabditis elegans Hypothetical
           protein C16C8.2 protein.
          Length = 729

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 160 NRHRQTSLGQQRSGSTPSHF-CSPDI*RTPACGVGNSN 270
           N+ R TS+   RS  T   F C P    TP CG G SN
Sbjct: 302 NKGRCTSVFLSRSDPTFGRFMCLPVARSTPVCGTGVSN 339


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical protein
            T23F1.5 protein.
          Length = 1262

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 452  IASPPDAVTPPPEAFIKWRRSPLPS 526
            + SPP+++     +FIK RR+ +PS
Sbjct: 1176 VTSPPNSILSDASSFIKHRRASVPS 1200


>Z68004-9|CAA91985.2|  120|Caenorhabditis elegans Hypothetical
           protein F47B10.5 protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 207 TFTFLFARYLANSSVRGWKLQPDFGGSRRSSVRDRALPGRVLPAVHQSPDRND 365
           T + L A Y+  +  R +++Q  +  +R    ++   PGRV    + SP RND
Sbjct: 65  TCSSLVACYICRAVRRSYQMQVQYNSNREVVFQN---PGRVHHVQYDSPRRND 114


>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
            metabolism enzyme-5 protein.
          Length = 2238

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 352  GD**TAGS-TRPGNARSLTDERRDPPKSGWSFQPRTLEFAKYLANKNVKVWIRYVVV 185
            GD   AGS T  G    L   R+  P  G ++   TL+F++Y+     +V  +Y+V+
Sbjct: 2180 GDRFPAGSLTNDGVGMPLLPLRKRDPIQGSNYGFGTLDFSEYIVRNPNRVLPKYIVM 2236


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 352  GD**TAGS-TRPGNARSLTDERRDPPKSGWSFQPRTLEFAKYLANKNVKVWIRYVVV 185
            GD   AGS T  G    L   R+  P  G ++   TL+F++Y+     +V  +Y+V+
Sbjct: 2218 GDRFPAGSLTNDGVGMPLLPLRKRDPIQGSNYGFGTLDFSEYIVRNPNRVLPKYIVM 2274


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 352  GD**TAGS-TRPGNARSLTDERRDPPKSGWSFQPRTLEFAKYLANKNVKVWIRYVVV 185
            GD   AGS T  G    L   R+  P  G ++   TL+F++Y+     +V  +Y+V+
Sbjct: 2180 GDRFPAGSLTNDGVGMPLLPLRKRDPIQGSNYGFGTLDFSEYIVRNPNRVLPKYIVM 2236


>AL021171-5|CAE17871.1|  688|Caenorhabditis elegans Hypothetical
           protein H04D03.4 protein.
          Length = 688

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 265 SNQILVDLVVHLLEIEHYQVGYFQQFINHRIVTT 366
           +N  LV+L++ ++     + GY+ +F+NH I T+
Sbjct: 581 NNTYLVNLLLAIVLSMTEKFGYYDEFLNHAIKTS 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,969
Number of Sequences: 27780
Number of extensions: 287782
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)