Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0508.Seq
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.5  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 410 LQARNQSRTNSACRIASPPDAVTPPPEAFIKW 505
           +  R Q+ T++      PPD+  PPP+    W
Sbjct: 643 IMPRVQNATDTTNFDEYPPDSDPPPPDDISGW 674


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 377 LVSRQV*MPSFLQARNQSRTNSACRIASPPDAVTPPPE 490
           L SR    P  L+A N     SACRI   P     PP+
Sbjct: 422 LDSRDELHPRELEAVN---LGSACRIHGSPATTAAPPQ 456


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  GRSSIFSTLPISRVNSPRRCAESSSSDQ 179
           G S+  S+   +   + R+C ESS  DQ
Sbjct: 235 GVSNFLSSTRTAETGTIRKCDESSPHDQ 262


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +1

Query: 454 CFTAGCGNAAAGSVHKVAKVTTSFIKSSTVTSLP 555
           CFT G   +       + K+    + SST T+ P
Sbjct: 299 CFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSP 332


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 402 GIHTCLDTNGFVRR 361
           G+H+C    GF RR
Sbjct: 80  GVHSCEGCKGFFRR 93


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 262 NSNQILVDLVVHLLEIEHYQVGYFQQFINHRIVTTNKT 375
           N+  ILV + VH++ +  Y +  F  F   ++  T+ T
Sbjct: 566 NTLWILVMVSVHVVALVLYLLDRFSPFGRFKLANTDGT 603


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,217
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)