Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0507.Seq
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    23   3.3  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    22   4.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.8  

>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 215 WWEQMQPKWLRISQLLKRY 159
           WWEQ+Q K+       KRY
Sbjct: 95  WWEQLQKKFDPQGIYKKRY 113


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 218 SWWEQMQPKWLRISQLLKRY 159
           SWW+++Q K+    +   RY
Sbjct: 95  SWWQELQEKYDPKGEYKSRY 114


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 575 LCGGDINNHRQRLAAHGDKGFRPRFTH 655
           L GGD + +     A  DK +R  +TH
Sbjct: 112 LGGGDTSPNSALQRARADKTYRRSYTH 138


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 582 PQRRRICHCAYCRYSGGKTHL 520
           P   RIC  +Y R S  KTHL
Sbjct: 249 PNVCRICGKSYARPSTLKTHL 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,333
Number of Sequences: 336
Number of extensions: 4518
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)