Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0507.Seq
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.39 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.68 
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   6.3  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.4  

>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 164 ASTVGKSAATSVASVPTNSHTWAKKRTLIIPSTLKSPDLPPL 289
           AS+  ++ AT V S   ++  WA+KR  ++    K P+  P+
Sbjct: 111 ASSSHETLATKVVSADESARLWAEKRRFLLQKLGKDPNSKPI 152


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 22   PAGRKLLRRRQSADGQNSPASG*RQPVICHLPAPGPAIALRS 147
            P G  + RR  + D +  P  G R P +    APG  +A RS
Sbjct: 1263 PPGAVMARRLMTKDPRREPQYGERVPYLIIAAAPGTTLANRS 1304


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 182 SAATSVASVPTNSHTWAKKRTLIIPSTLKSPDLPPLFASKRTGPITIS 325
           S  +SVA +   S +       ++P+ + SP+  P  A   TGP  ++
Sbjct: 340 SMLSSVAPLMQKSKSVPTSIPSVVPANISSPNPNPTLAPNPTGPSRVT 387


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 180 FPTVEALRQHMAAQSDRWAWRWKMANYWLP 91
           +PT + + +H  A  +  A  W+MA Y  P
Sbjct: 590 YPTTKYIEEHPLAYKNPNATTWEMAGYTWP 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,208
Number of Sequences: 5004
Number of extensions: 67199
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)