Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0507.Seq
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0128 + 22961285-22961386,22962176-22962748 90 2e-18
07_03_0990 + 23173868-23174200 35 0.076
05_03_0601 - 16043516-16044037 32 0.41
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 32 0.54
02_04_0237 + 21184480-21184809 32 0.54
04_01_0225 + 2836634-2837086 30 1.6
03_02_0997 - 13094357-13094379,13094797-13095058 30 2.2
01_03_0019 + 11696607-11696953,11697078-11697321 30 2.2
11_06_0480 - 24081075-24081723,24083427-24084202 29 2.9
02_01_0442 + 3196592-3196661,3198663-3198739,3199185-3199273,320... 29 2.9
07_01_0495 + 3722319-3722517,3723325-3723482,3723652-3723929,372... 29 3.8
04_03_0413 + 15612568-15613005 29 3.8
08_02_1390 - 26665605-26665933,26665939-26666023 29 5.0
08_02_0224 + 14457427-14457879 29 5.0
05_06_0049 + 25182075-25182332,25182624-25182882,25182986-251832... 29 5.0
04_03_0422 + 15746168-15746620 29 5.0
03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093 29 5.0
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 6.6
07_03_0098 - 13383385-13384392 28 6.6
02_03_0271 + 17139766-17140737 28 6.6
02_05_0749 + 31468643-31469086 28 8.7
>04_04_0128 + 22961285-22961386,22962176-22962748
Length = 224
Score = 89.8 bits (213), Expect = 2e-18
Identities = 46/92 (50%), Positives = 58/92 (63%)
Frame = -2
Query: 540 SGGKTHLGSDPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAA 361
+G K PLCH L LS V V+L E + V IE +GKTGVEMEA+TA ++A
Sbjct: 130 TGAKQTSNLIPLCHNLNLSHVRVDLTLNEEDSSVMIEGEASTSGKTGVEMEAMTAVAIAG 189
Query: 360 LTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDF 265
LT+YDMCKA K++ I + L KSGGKSG +
Sbjct: 190 LTVYDMCKAASKNICITDICLQHKSGGKSGSW 221
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -3
Query: 578 KGDVFATARIAGIQAAKRTWDLI 510
KGDV A+IAGI AK+T +LI
Sbjct: 117 KGDVLTVAKIAGITGAKQTSNLI 139
>07_03_0990 + 23173868-23174200
Length = 110
Score = 34.7 bits (76), Expect = 0.076
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -1
Query: 154 AHGCAERSLGLALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG 11
AHG +R G L DG+ L+ QT D + DGDEV FF + GG
Sbjct: 64 AHGRVQRGTGRFLYDGRRLSGW-QTPAELD--MEDGDEVDFFEELIGG 108
>05_03_0601 - 16043516-16044037
Length = 173
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 532 AA*IPAIRAVANTSPLWWRHQ*SSPASRCAW 624
AA PA+ V + SP WWR SSPA R W
Sbjct: 33 AAVEPAVAEVEDFSPEWWRLVGSSPAFRDRW 63
>04_01_0508 +
6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 374 AAVNASISTPVFPVRRHKVSIRTR----LCSGSACKLTSTLLS 490
++VN+S+ TP FP +H S R G +CKL+ LL+
Sbjct: 585 SSVNSSLPTPTFPASQHANSTTARSAPAAADGISCKLSKVLLT 627
>02_04_0237 + 21184480-21184809
Length = 109
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 103 LLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG 11
++ A+N+ D + DGDE+A PP++GG
Sbjct: 79 MVLALNEEYAPEDAAVGDGDELAIIPPISGG 109
>04_01_0225 + 2836634-2837086
Length = 150
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -2
Query: 294 AKSGGKSGDFKVEGMIKVLFFAQVCELVGTDATEVAADFPTVEALRQHMAAQSDRWAWRW 115
++ GG G +VE + + E+ A E+AA+ E LR+ RW WRW
Sbjct: 90 SRDGGGEGGGEVEAATAEMAVERTAEMAAERAAEMAAE-RAEERLRRR------RWRWRW 142
Query: 114 K 112
+
Sbjct: 143 R 143
>03_02_0997 - 13094357-13094379,13094797-13095058
Length = 94
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 696 AKRTWWMSPPKRKPCVKRGRKPLSPCAARRWR*LLMSPPQRRRICHCAYCRYSGGKT 526
A WW+ +R+ C +P A R + P RRR C C Y R G T
Sbjct: 39 AVAAWWLR--RRRSCSGADVEPACAALAGSGRPRPVPSPPRRRACLCRYGRDEVGAT 93
>01_03_0019 + 11696607-11696953,11697078-11697321
Length = 196
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = -2
Query: 468 LQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAK 289
+ + P H V + L L E A TAA +A ++ D CK + V L A
Sbjct: 1 MASSPYHAAVGVAVLAILLAAPAAEAGAPTAAPLANYSLEDACKKTGPHYGLCIVTLSAD 60
Query: 288 SGGKSGD 268
KS D
Sbjct: 61 RSAKSSD 67
>11_06_0480 - 24081075-24081723,24083427-24084202
Length = 474
Score = 29.5 bits (63), Expect = 2.9
Identities = 27/79 (34%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Frame = -2
Query: 717 LTHINPLAKRTWWMSPPKRKP---CVKRGRKPLSPC--AARRWR*LLMSPPQRRRICHCA 553
LT P R WW R C L C A RRW L PP+R CA
Sbjct: 93 LTASVPAGDRAWWAVVDHRDGLLLCDVYWGSRLFVCNPATRRWATLPQPPPEREPAAACA 152
Query: 552 YCRYSGGKTHLGSDPLCHP 496
GGK +L DP P
Sbjct: 153 -----GGK-YLAFDPAVSP 165
>02_01_0442 +
3196592-3196661,3198663-3198739,3199185-3199273,
3200101-3200220,3200970-3201086,3201290-3201433,
3201537-3201660,3201772-3201963,3202542-3202907
Length = 432
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 253 PFHLKVTRLAAALRQQTYRTNHHIFLH--RFAHVINGQRRHGGR 378
PF VT LAA R++ + H FA +I G RR+GGR
Sbjct: 325 PFRKHVTSLAALDFLVCLRSDAFVMTHGGNFAKLIMGARRYGGR 368
>07_01_0495 +
3722319-3722517,3723325-3723482,3723652-3723929,
3723946-3724474
Length = 387
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 158 RNASTVGKSAATSVASVPTNSHTWAKKRTLIIPSTLKSPDLPP 286
R ST+G S+++ VA++ W+ + I PST S P
Sbjct: 210 RETSTIGMSSSSLVAALKLKCPCWSTNSSQITPSTTTSMGRTP 252
>04_03_0413 + 15612568-15613005
Length = 145
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 285 GGKSGDFKVEGMIKVLFFAQVCELVGTDATEVAADFPTVEALRQHMAAQSDRWAWRWK 112
GG G +VE + + E+ A E+AA+ E LR+ RW WRW+
Sbjct: 88 GGGEGGGEVEAATVEMVVERTAEMAAERAAEMAAE-RAEERLRRR------RWRWRWR 138
>08_02_1390 - 26665605-26665933,26665939-26666023
Length = 137
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 285 GGKSGDFKVEGMIKVLFFAQVCELVGTDATEVAADFPTVEALRQHMAAQSDRWAWRWK 112
GG G +VE + + E+ A E+AA+ E LR+ RW WRW+
Sbjct: 80 GGGEGGGEVEAATVEMAVERTAEMAAERAAEMAAE-RAEERLRRR------RWRWRWR 130
>08_02_0224 + 14457427-14457879
Length = 150
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = -2
Query: 285 GGKSGDFKVEGMIKVLFFAQVCELVGTDATEVAADFPTVEALRQHMAAQSDRWAWRWK 112
GG G +VE + + E+ A E+AA+ E LR+ RW WRW+
Sbjct: 93 GGGEGGGEVEAATVEMAVERTAEMAAERAAEMAAE-RAEERLRRR------RWRWRWR 143
>05_06_0049 +
25182075-25182332,25182624-25182882,25182986-25183204,
25183890-25184032,25184600-25184899
Length = 392
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -2
Query: 339 KAVQKDMVIGPVRLL---AKSGGKSGDFKVEGMIKVLFFAQVCELVGTDATEVAADFPTV 169
+ V + + +GP LL A S V ++K L F++V E V +AAD+P
Sbjct: 249 RMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWVDRIAADWPFR 308
Query: 168 EALRQHMAA 142
+ H AA
Sbjct: 309 RIIPAHFAA 317
>04_03_0422 + 15746168-15746620
Length = 150
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -2
Query: 285 GGKSGDFKVEGMIKVLFFAQVCELVGTDATEVAADFPTVEALRQHMAAQSDRWAWRWK 112
GG G +VE + + E+ A E+AA+ +R+ RW WRW+
Sbjct: 93 GGGEGGGEVEAATVEMVVERTAEMPAERAAEIAAERAEERLMRR-------RWRWRWR 143
>03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093
Length = 435
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -2
Query: 729 SMSQLTHINPLAKR----TWWMSPPKRKPCVKRGRKPLSPCAAR 610
S+ TH +P+A+ WW P R+ +RG LSP + R
Sbjct: 233 SLPNPTHSSPVAQLHPGGRWWKRPRWRRTPARRGHVELSPTSLR 276
>12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.3 bits (60), Expect = 6.6
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +2
Query: 164 ASTVGKSAATSVA-SVPTNSHTWAKKRTLIIPSTLKSPDLPPLFASKRTGPITISFCTAL 340
+S G S S+A T S T A + I + L S + PP F S T P + +
Sbjct: 850 SSAPGSSPVFSLAVGSGTTSATPASASSPIFCNRLTSTNAPP-FGSPATSPFSSTSSPVF 908
Query: 341 HMS*MVSAATEAAVNASISTPVFPVRRHKVSIRT 442
+ +AT NAS +TP+F V + T
Sbjct: 909 SFT----SATPTIPNASPTTPLFGTPSPTVGLST 938
>07_03_0098 - 13383385-13384392
Length = 335
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 469 FTGRAGAQSGAYRNLMPPDRENRCRNGSINRGLRGGADH 353
FT R+ ++S +R + P R++ R G +NR R +D+
Sbjct: 251 FTNRSSSRSDWHR-IRRPSRQSLARRGLLNRPYRNNSDY 288
>02_03_0271 + 17139766-17140737
Length = 323
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 598 SSPASRCAW*QRLPPALHARFPLWRRHPPCAL 693
S+P AW +LPP L +WR PC L
Sbjct: 295 SAPEEAAAWKAKLPPELRRYVDMWR---PCLL 323
>02_05_0749 + 31468643-31469086
Length = 147
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -2
Query: 213 VGTDATEVAA--DFPTVEALRQH-MAAQSDRWAWRWK 112
VG D E AA D E + H M ++ RW W WK
Sbjct: 66 VGADDVEAAARRDAMEAEEVCSHGMEGRAARWGWGWK 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,547,865
Number of Sequences: 37544
Number of extensions: 611495
Number of successful extensions: 1908
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -