Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0507.Seq
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 1e-19
SB_3811| Best HMM Match : MoaE (HMM E-Value=0) 75 8e-14
SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13) 31 1.3
SB_32671| Best HMM Match : SerH (HMM E-Value=0.4) 31 1.3
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_29315| Best HMM Match : Herpes_UL21 (HMM E-Value=0.75) 29 5.1
SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 28 6.7
SB_58031| Best HMM Match : DB (HMM E-Value=1.5) 28 8.9
SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031) 28 8.9
SB_38347| Best HMM Match : TFIIB (HMM E-Value=0.0018) 28 8.9
SB_10749| Best HMM Match : DB (HMM E-Value=1.5) 28 8.9
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 93.9 bits (223), Expect = 1e-19
Identities = 47/86 (54%), Positives = 59/86 (68%)
Frame = -2
Query: 510 PLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYDMCKAV 331
PLCH + L+++E++L+ E E V I + G+TGVEMEALTA SVAALT+YDMCKAV
Sbjct: 110 PLCHNIPLTRIELSLRLEEEDQAVEIRSTVTTVGRTGVEMEALTAVSVAALTVYDMCKAV 169
Query: 330 QKDMVIGPVRLLAKSGGKSGDFKVEG 253
D+ I V LL K+GGK DF G
Sbjct: 170 SHDIRISDVMLLRKTGGKR-DFTRSG 194
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -3
Query: 578 KGDVFATARIAGIQAAKRTWDLI 510
KGDV TA +AGI AAK T LI
Sbjct: 87 KGDVLTTAHLAGIMAAKHTSTLI 109
>SB_3811| Best HMM Match : MoaE (HMM E-Value=0)
Length = 208
Score = 74.5 bits (175), Expect = 8e-14
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = -1
Query: 124 LALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPP 23
LALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPP
Sbjct: 36 LALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPP 69
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -2
Query: 204 DATEVAADFPTVEALRQHMAAQSDRWA 124
DATEVAADFPTVEALRQHMAAQSDRWA
Sbjct: 9 DATEVAADFPTVEALRQHMAAQSDRWA 35
>SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13)
Length = 580
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 545 RQYAQWQIRRLCGGDINNHRQRLAAHGDKGFRPRFTHGFRF 667
R ++ W ++ + +H + A D+ RP+ TH FRF
Sbjct: 514 RLWSTWDLQHIRDIAPEHHLHPITAFSDRRIRPKMTHPFRF 554
>SB_32671| Best HMM Match : SerH (HMM E-Value=0.4)
Length = 406
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 161 NASTVGKSAATSVASVPTNSHTWAKKRT---LIIPSTLKSPDLPPLFASKRTGPITISFC 331
+++T +ATS+ S+P+ S A T L S + P L AS + P +S
Sbjct: 181 SSNTPTALSATSLMSLPSTSSLEASSNTPTALSATSLMSLPSTSSLKASSNS-PSALSTT 239
Query: 332 TALHMS*MVSAATEAAVNASIST 400
+ L S S+AT V++S++T
Sbjct: 240 SLLSFSIQPSSATPIQVSSSVTT 262
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +2
Query: 185 AATSVASVPTNSHTWAKKRTLIIPSTLKSPDLPPLFASKRTGPITISFCTALHMS*MVSA 364
A+T++ S+P S + T+ I S SP PP +S TI T L+ S M +A
Sbjct: 1167 ASTTIYSLPPTSMLNSTPATVSIDSIAPSPTTPPSSSS-----TTI---TTLNASVMATA 1218
Query: 365 ATEAAVNASIST 400
A++ A+ ST
Sbjct: 1219 TPSASLEANAST 1230
>SB_29315| Best HMM Match : Herpes_UL21 (HMM E-Value=0.75)
Length = 814
Score = 28.7 bits (61), Expect = 5.1
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = +2
Query: 155 WRNASTVGKSAATSVASVPTNSHTWAKK----RTLIIPSTLKSPDLPPL-FA-SKRTGPI 316
WR S V +S+ S++ V T +W + T I +T L P FA S RT P
Sbjct: 466 WRRLSDVLRSSMVSLSVVTTPCSSWTRSVFFWMTASISATDPIASLKPFSFATSCRTPPF 525
Query: 317 TISFCTALHMS*MVSAATEAAVNASISTPVFPVRRHKVSIRTRLCSGSA 463
+++ C L + + + IS VFP+R IR L SG A
Sbjct: 526 SLNSCLGLVQPPL------SRLRCCIS--VFPLRYDWNRIRFSLRSGQA 566
>SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 136 RSLGLALEDGKLLAAVNQTLVSFDHPLTDGDE 41
RSLGL GK+L ++ L + PL DG E
Sbjct: 254 RSLGLTKTRGKILERFDKKLATTGRPLLDGKE 285
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 244 SSFFRPGVRVGGNRCNRSGCGFPN 173
+S+ PG +GGN C SG GF N
Sbjct: 542 NSWAFPGGVLGGNNCEDSGIGFTN 565
>SB_58031| Best HMM Match : DB (HMM E-Value=1.5)
Length = 297
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 311 PITISFCTALHMS*MVSAATEAAVNASISTPVFPVRRHKVSIRTR 445
P I +C S V + TE N +++ +P+ V RTR
Sbjct: 100 PSAIQYCLKAQHSPFVISGTETDFNVPVTSCTYPITHKMVICRTR 144
>SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 184 RSHFGCICSHQLAHLGE 234
+ HF C+CSH HL E
Sbjct: 11 KPHFACLCSHSNGHLTE 27
>SB_3840| Best HMM Match : MANEC (HMM E-Value=0.031)
Length = 533
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 239 RTLIIPSTLKSPDLPPLFASKRTGPITISFCTALHMS 349
R + IP+ +PD+PP+ S+ P T S T +S
Sbjct: 150 RWMAIPTKEVTPDIPPIVTSEERNPDTPSVFTTKKVS 186
>SB_38347| Best HMM Match : TFIIB (HMM E-Value=0.0018)
Length = 631
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 627 SPCAARRWR*LLMSPPQRRRICHCA 553
+P A RWR L +PP C CA
Sbjct: 161 NPAGAERWRKSLRTPPPSLATCACA 185
>SB_10749| Best HMM Match : DB (HMM E-Value=1.5)
Length = 616
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 311 PITISFCTALHMS*MVSAATEAAVNASISTPVFPVRRHKVSIRTR 445
P I +C S V + TE N +++ +P+ V RTR
Sbjct: 314 PSAIQYCLKAQHSPFVISGTETDFNVPVTSCTYPITHKMVICRTR 358
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,075,105
Number of Sequences: 59808
Number of extensions: 596178
Number of successful extensions: 1602
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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