Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0507.Seq
         (730 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein...    97   8e-21
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    30   1.4  
At4g14840.1 68417.m02281 expressed protein                             30   1.8  
At4g02140.1 68417.m00286 expressed protein                             30   1.8  
At1g67780.1 68414.m07734 hypothetical protein                          27   9.6  

>At1g01290.1 68414.m00045 molybdopterin biosynthesis CNX3 protein /
           molybdenum cofactor biosynthesis enzyme CNX3 (CNX3)
           identical to molybdopterin biosynthesis CNX3 protein
           SP|Q39056 from [Arabidopsis thaliana]
          Length = 270

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 50/92 (54%), Positives = 60/92 (65%)
 Frame = -2

Query: 540 SGGKTHLGSDPLCHPLMLSKVEVNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAA 361
           +G K      PLCH + L+ V V+L+  PE   V IE     TGKTGVEMEA+TA SVA 
Sbjct: 176 NGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMTAVSVAG 235

Query: 360 LTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDF 265
           LT+YDMCKA  KD+ I  VRL  K+GGKSG +
Sbjct: 236 LTVYDMCKAASKDISITDVRLERKTGGKSGSW 267



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 578 KGDVFATARIAGIQAAKRTWDLI 510
           KGDV   A+IAGI  AK+T  LI
Sbjct: 163 KGDVLGVAKIAGINGAKQTSSLI 185


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
 Frame = +2

Query: 152 CWRNASTVGKSAATSVASVPTNSHTWAKKRTLIIPSTLKSPDLPPLFASKRTGPITISFC 331
           C R  +  G SA   +  +P NS TWAKK   + P  +    + P+  S++     +S+C
Sbjct: 131 CIRALNAAGTSA---ILRLPENSPTWAKKALDLGPQGI----MFPMIESRKDATKAVSYC 183

Query: 332 TALHMS*MVSAATEA-AVNASISTPVFPVRRHKVSIRTRLCSGSACKLTSTLLSISG 499
                    SA T   A N  I          ++ I  ++ SG   K    + ++ G
Sbjct: 184 RFPPDGIRGSAHTVVRASNYGIDEGYLSNYAEEILIMCQVESGEGVKKADEIAAVDG 240


>At4g14840.1 68417.m02281 expressed protein
          Length = 555

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 215 NSHTWAKKRTLIIPSTLKSPDLPPLFASKRT 307
           N+  + K R LI+P  LK  ++P  FASK T
Sbjct: 103 NNAGFHKDRLLILPERLKGKNVPKSFASKNT 133


>At4g02140.1 68417.m00286 expressed protein 
          Length = 112

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 160 TPAHGCAERSLGLALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG*D 5
           +PA   A  +LG  L   +L ++  +T     H   DGDE + FP    G D
Sbjct: 4   SPAFAAARSTLGRRLHAKRLSSSTGRTADPEIHARNDGDEPSLFPSDPEGLD 55


>At1g67780.1 68414.m07734 hypothetical protein
          Length = 515

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
 Frame = -2

Query: 582 PQRRRICHCAYCRYSGGKTHLGSDPLCHPLMLSKV-EVNLQAEPE-HNRVRIETLCRLTG 409
           PQ R IC+C++CR   G    G   L H    S +  V++  E E H+    +   +L  
Sbjct: 87  PQCRGICNCSFCRKKRGLNPTGI--LAHKAKASGLASVSMLLEVEGHDNFAYQKKPKLVL 144

Query: 408 KTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEGMIK 244
           KT  ++      ++  L    +C   Q D+     +++ KS   +   K++  I+
Sbjct: 145 KTITQILIFVNLALNVL----LCLLDQYDVAKDKKKVVGKSKKANATHKLKEEIQ 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,902,168
Number of Sequences: 28952
Number of extensions: 405979
Number of successful extensions: 1128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)