Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0506.Seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    28   1.1  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    27   2.5  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   2.5  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   3.3  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   5.8  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   5.8  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   7.7  

>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 459 THIVYNVPTAPPLSLTKLKNSSTPTY 536
           T+IV  +P+ P  SL    NSS+PTY
Sbjct: 427 TNIVQPIPSHPNDSLNPFYNSSSPTY 452


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 378 VWEERSNDAP-DPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQF 554
           V+++  NDA  +P+  +  Q  +       +V N    PPL L  L +++  +  T E  
Sbjct: 388 VFDQAENDAGIEPSNGFEDQQQQLLGNSNEVVENYDVNPPLPLNPLPSNTQQSESTYEYS 447

Query: 555 SQYRQNPP 578
           ++    PP
Sbjct: 448 ARQLPKPP 455


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 477 VPTAPPLSLTKLKNSSTP--TYQTDEQFSQYRQNPPKTISHQ 596
           VP  P ++LT     S P  T  ++ Q +Q +Q+ P+T  HQ
Sbjct: 112 VPMMPAVNLTNQVAFSAPQTTASSNTQLTQQQQSLPQTNEHQ 153


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 405 PDPNAQWRPQPFKSQP 452
           PDPNA  RP   +SQP
Sbjct: 169 PDPNAMQRPHDLESQP 184


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 528 PTYQTDEQFSQYRQNPPKTI 587
           P Y+ +E F  ++QNPP  +
Sbjct: 157 PFYEHEEDFINFKQNPPSGV 176


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 417 AQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKL 512
           AQWR   ++ QP Y ++   +  AP L +T+L
Sbjct: 665 AQWRNAGYQEQPEYVNL-KELLLAPRLEVTEL 695


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = -3

Query: 119  RFLEHSKSLAQTSGCVFLTAREHQLCVVC 33
            R  E   SL     C F     H LC+VC
Sbjct: 1251 RICEKCYSLVPRMSCTFCCLSIHGLCIVC 1279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,701
Number of Sequences: 5004
Number of extensions: 55736
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)