Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0506.Seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 31 1.1
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 30 2.0
04_03_0904 + 20717005-20718087 30 2.0
01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549... 29 2.6
11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198 28 6.0
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415 28 6.0
11_06_0734 - 26774471-26774652,26775008-26775137,26775447-267755... 28 7.9
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191 28 7.9
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +3
Query: 402 APDPNAQWRPQ-PFKSQPRY-THIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNP 575
AP P+ P+ P+ + P T ++ APP+ + + YQT QF QY Q P
Sbjct: 310 APVPSVPALPRDPYYAPPAQPTETMHQQYQAPPVPQPQAPPAPPQQYQTPPQFPQYSQ-P 368
Query: 576 PKTISHQPNS 605
P++ P++
Sbjct: 369 PQSGMVNPST 378
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 411 PNAQWRPQPFKSQPR-YTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPP 578
P + P P QP TH Y P AP ++ + YQT Q++QY Q PP
Sbjct: 316 PQESYYP-PSAVQPTDTTHQQYQAPPAPQ---SQAPPAPPQHYQTPPQYAQYSQPPP 368
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +3
Query: 429 PQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFS---QYRQNPPKTISHQP 599
P +K QP+ T Y PP + K + TP T S Q + NPP T QP
Sbjct: 175 PPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQP 234
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 429 PQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKTISHQP 599
P +K QP+ T Y PP + K + PTY+ Q + NPP T P
Sbjct: 195 PPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYK-----PQPKPNPPPTYKPAP 246
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = +3
Query: 405 PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKT 584
P PN P +K QP+ T Y PT P + K + TPT T + NPP T
Sbjct: 253 PKPNP---PPTYKPQPKPTPTPYTPPTYKP----QPKPTPTPTPYTPTP----KPNPPPT 301
Query: 585 ISHQP 599
QP
Sbjct: 302 YKPQP 306
>01_01_0710 +
5492389-5492745,5493664-5493948,5494121-5494438,
5494900-5495127,5495884-5495984,5496493-5496604,
5496654-5496662,5496897-5497340,5497649-5497909
Length = 704
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 535 TKPTNSSANTGRTHPKLFHTSPILKFSKPTR 627
T P SS ++ R + + FH+ P++ +KP++
Sbjct: 504 THPAESSQDSQRVYTRTFHSGPLVNQNKPSK 534
>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
Length = 546
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +1
Query: 508 SSKIRQLLHTKP-TNSSANTGRT--HPKLFHTS 597
S+ + LLH KP + SS+NT T HP L H S
Sbjct: 12 SALVSLLLHGKPISRSSSNTNTTLPHPSLLHKS 44
>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
Length = 1490
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/50 (40%), Positives = 25/50 (50%)
Frame = -2
Query: 435 AGVSIERWGLVRR*TFLPKPVRERDTAAGEAATAQGPVARWAHPSCRTSP 286
A V +ERWG +R T P V D A E+ T++G R A R SP
Sbjct: 1063 ASVMLERWGCLRGST--PANVVADDNTAAESRTSRGQPLRVA--LARASP 1108
>11_06_0734 -
26774471-26774652,26775008-26775137,26775447-26775596,
26775685-26775918,26775990-26776161,26776285-26776506,
26776604-26776770,26776880-26777018,26777342-26777693,
26778175-26778370
Length = 647
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 476 VVYDMRVSRLRFEGLGSPLSVGVWCVVRPF 387
++ D R + EGL PLS + C+ PF
Sbjct: 599 ILRDWRFGHYKMEGLQDPLSCFIRCIFAPF 628
>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
Length = 539
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 115 KRPSEFDYRNFDVTCE-RNKGLK 180
K P E YR F VTC+ RN LK
Sbjct: 305 KHPPECGYRTFQVTCDHRNASLK 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,309,813
Number of Sequences: 37544
Number of extensions: 373630
Number of successful extensions: 1024
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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