Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0506.Seq
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)                   32   0.38 
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)                   30   2.0  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_41267| Best HMM Match : Plasmid_parti (HMM E-Value=3.1)             29   4.6  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                28   6.1  
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)                    28   8.1  
SB_19802| Best HMM Match : fn3 (HMM E-Value=0)                         28   8.1  
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)                    28   8.1  

>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
          Length = 591

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 405 PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQT 542
           P   A+ RPQPF   P   H+      + P+SLT LK+S    Y T
Sbjct: 328 PPAAARSRPQPFAPSPFTRHMSLRY-RSTPMSLTPLKDSGKAGYST 372


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 390  RSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTY-QTDEQFSQYR 566
            R   AP    Q+ P    + P         PT PP+S+  LK+ S P Y  T     +Y 
Sbjct: 1196 RPQSAPATRHQYLPYTSHTDPLALAPPKLYPTGPPVSVAVLKSRSVPFYTATSYVIPRYN 1255

Query: 567  QNPPKT 584
             +P +T
Sbjct: 1256 THPVET 1261


>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
          Length = 589

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 453 RYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKTISHQ 596
           R T    + P  PP+  +  + SS+PT +   Q S  ++ PP   +H+
Sbjct: 413 RQTSTSRSQPRDPPVQRSNSQRSSSPTKEVTVQRSSSQRGPPSPSAHK 460


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 453  RYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKTISHQ 596
            R T    + P  PP+  +  + SS+PT +   Q S  ++ PP   +H+
Sbjct: 3519 RQTSTSRSQPRDPPVQRSNSQRSSSPTKEVTVQRSSSQRGPPSPSAHK 3566


>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 532 HTKPT--NSSANTGRTHPKLFHTSPILKFSKP 621
           HT+PT  ++    G T P L HT P+L  ++P
Sbjct: 66  HTRPTLGHTRPTLGHTRPTLGHTRPMLGHTRP 97



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 532 HTKPT--NSSANTGRTHPKLFHTSPILKFSKP 621
           HT+PT  ++    G T P L HT P+L  + P
Sbjct: 73  HTRPTLGHTRPTLGHTRPMLGHTRPMLGHTHP 104


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 432 QPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKTISHQPNS 605
           QP+K   + T+   N PT  P +    + ++ PT Q   Q +    N P   ++QP +
Sbjct: 208 QPYKQTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQTNQPTN 265


>SB_41267| Best HMM Match : Plasmid_parti (HMM E-Value=3.1)
          Length = 133

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 677 IFGLIEI*GNKNISDQHLVGFENLRIGLV*NSFGW 573
           + GL+E+ G KN+  QH   FE+L +     +FGW
Sbjct: 79  VTGLLEL-GEKNLKRQHKFYFESLNVN---GAFGW 109


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 435 PFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKTISHQP 599
           PF +   +  I Y+ P  PP   + L  SST T Q+   F  ++ +P  +  H+P
Sbjct: 374 PFIAHQYHPAISYHRPQLPP---SHLSPSSTTTIQSSLTFIAHQYHPAISYLHRP 425


>SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 301

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 426 RPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTP 530
           +P P   +P Y +     PTAPP+S +K     TP
Sbjct: 191 QPYPLPIEPLYAYQPLPYPTAPPVSQSKTFLHPTP 225


>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 412

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 405 PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLK 515
           P P   ++P PF       H++Y  PTAPP ++ + K
Sbjct: 179 PPPLNPYQPPPFPPP----HLMYPQPTAPPAAIPRAK 211


>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
          Length = 884

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 390 RSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQ 569
           +S   PD     + +  +  PR  H+  N P+ PP   TK+   S   Y  D   +++ +
Sbjct: 579 KSRTLPDIPENKKIKDERPSPRKLHLQKNKPSLPP---TKINTYSNIGYFLDNSLNRFAR 635

Query: 570 N 572
           N
Sbjct: 636 N 636


>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1075

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 474 NVPTAPPLSLTKLKNSSTPTYQT 542
           N PTAPP ++T +  SST  Y T
Sbjct: 396 NAPTAPPQNVTAMALSSTSIYVT 418


>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
          Length = 1014

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 31  GQTTHS*CSRAVRKTHPLVCASDLLCSRKRPSE 129
           G+ +H  C++A  K  P    S LLCS K  +E
Sbjct: 805 GELSHCPCAKAGLKCLPFCRCSKLLCSNKAQAE 837


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,196,016
Number of Sequences: 59808
Number of extensions: 432340
Number of successful extensions: 1309
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)