Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0506.Seq
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    24   3.9  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    24   3.9  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    24   5.1  
DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.       24   5.1  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    24   5.1  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    24   5.1  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   9.0  

>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 414 NAQWRPQPFKSQP 452
           N +W+P PF S+P
Sbjct: 113 NLKWQPMPFSSKP 125


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 414 NAQWRPQPFKSQP 452
           N +W+P PF S+P
Sbjct: 113 NLKWQPMPFSSKP 125


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 399 DAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLS 500
           D   P+  W      S P Y+ I +  PTA  L+
Sbjct: 226 DFNQPSISWSTADPSSSPAYSSITHYEPTARSLA 259


>DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.
          Length = 595

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 10  ARAPPTDGQTTHS*CSRAVRKTHPLVCASDLLCSRKRPSEFDYRNFDVT 156
           +++P  D Q T     +  RK H +  A+ +   R  P    YRN  +T
Sbjct: 139 SQSPSNDQQPT-----KRERKAHEITLANGIFVQRNIPLSDTYRNQSMT 182


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 220 TSTTRLQLLTCLWCTRPVYT 279
           T +  +Q   C WCT P +T
Sbjct: 41  TCSQCIQTTNCRWCTMPNFT 60


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 398 RRTRPQRSMETPALQISTSIHAYRIQRSNCSSS 496
           +R  P  S  TP    ST++  Y  +  NCSSS
Sbjct: 214 KRDCPMESNNTPT---STTMRDYSRKNENCSSS 243


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 351  GEAATAQGPVARWAHPSCRTSP*CRVHWTRTP*ARQQ 241
            G +    G VA+ AHPSC   P  R  +   P   +Q
Sbjct: 1764 GTSHVMSGMVAK-AHPSCEGFPYSRTIYANDPTENKQ 1799


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,531
Number of Sequences: 2352
Number of extensions: 13564
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)