Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0506.Seq
(685 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic su... 31 3.8
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su... 31 3.8
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su... 31 3.8
AL080317-4|CAO77893.1| 184|Homo sapiens REV3-like, catalytic su... 31 3.8
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su... 31 3.8
AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta cat... 31 3.8
AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta cat... 31 3.8
AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta cat... 31 3.8
AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta cat... 31 3.8
AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta cat... 31 3.8
AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta cat... 31 3.8
AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta pro... 31 3.8
AB209256-1|BAD92493.1| 750|Homo sapiens REV3-like, catalytic su... 31 3.8
U91935-1|AAB49728.1| 648|Homo sapiens retina-derived POU-domain... 31 5.0
U91934-1|AAB49727.1| 684|Homo sapiens retina-derived POU-domain... 31 5.0
D78360-1|BAA11372.1| 570|Homo sapiens protein phosphatase 2A 74... 31 5.0
BC001175-1|AAH01175.1| 570|Homo sapiens protein phosphatase 2, ... 31 5.0
>AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3052
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2094 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2152
>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2172 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2230
>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2172 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2230
>AL080317-4|CAO77893.1| 184|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta (yeast) protein.
Length = 184
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 29 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 87
>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic subunit
of DNA polymerase zeta (yeast) protein.
Length = 3130
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2172 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2230
>AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 2 protein.
Length = 3052
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2094 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2152
>AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit variant 1 protein.
Length = 3052
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2094 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2152
>AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2172 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2230
>AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3052
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2094 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2152
>AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2172 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2230
>AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta
catalytic subunit protein.
Length = 3130
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2172 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2230
>AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta protein.
Length = 3052
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 2094 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 2152
>AB209256-1|BAD92493.1| 750|Homo sapiens REV3-like, catalytic
subunit of DNA polymerase zeta variant protein.
Length = 750
Score = 31.1 bits (67), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 505 PSSKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPTRCWSEIFLFPYISMRPKIEK 684
P S+ ++ L P N+ A TG+ FH++PI++ R L P +S PK +K
Sbjct: 233 PCSEPQEPLVISPINTRARTGKCESLCFHSTPIIQRKLLERLPEAPGLSP-LSTEPKTQK 291
>U91935-1|AAB49728.1| 648|Homo sapiens retina-derived POU-domain
factor-1 protein.
Length = 648
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = +3
Query: 384 EERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQY 563
+++ P P+ PQP P + PT P + PT Q +Q Q
Sbjct: 183 QQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQL-QQAPQP 241
Query: 564 RQNPPKTISHQPN 602
+Q+ P + SH N
Sbjct: 242 QQHQPHSHSHNQN 254
>U91934-1|AAB49727.1| 684|Homo sapiens retina-derived POU-domain
factor-1 protein.
Length = 684
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = +3
Query: 384 EERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQY 563
+++ P P+ PQP P + PT P + PT Q +Q Q
Sbjct: 183 QQQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQL-QQAPQP 241
Query: 564 RQNPPKTISHQPN 602
+Q+ P + SH N
Sbjct: 242 QQHQPHSHSHNQN 254
>D78360-1|BAA11372.1| 570|Homo sapiens protein phosphatase 2A 74
kDa regulatory subunit (delta or B'' subunit) protein.
Length = 570
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 387 ERSNDA-PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQ 560
E + +A P P Q +PQ +SQP ++ + T PP L+K+K S P E F Q
Sbjct: 31 ENTEEAQPQPQPQPQPQA-QSQPPSSNKRPSNSTPPPTQLSKIKYSGGPQIVKKELFIQ 88
>BC001175-1|AAH01175.1| 570|Homo sapiens protein phosphatase 2,
regulatory subunit B', delta isoform protein.
Length = 570
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 387 ERSNDA-PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQ 560
E + +A P P Q +PQ +SQP ++ + T PP L+K+K S P E F Q
Sbjct: 31 ENTEEAQPQPQPQPQPQA-QSQPPSSNKRPSNSTPPPTQLSKIKYSGGPQIVKKELFIQ 88
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,278,888
Number of Sequences: 237096
Number of extensions: 2088242
Number of successful extensions: 4660
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4649
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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