Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0506.Seq
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 31 0.58
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 31 0.58
Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 30 1.8
DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagella... 30 1.8
DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagella... 30 1.8
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 30 1.8
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 29 3.1
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 29 3.1
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 29 4.1
U42438-8|AAF99867.2| 368|Caenorhabditis elegans Homolog of yeas... 27 9.4
AF105010-1|AAD16893.1| 368|Caenorhabditis elegans LAG1Ce-1 prot... 27 9.4
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = +1
Query: 421 NGDPSPSNLNL---DTRISYTTFQXXXXXXXPSSKIRQLLHTKPTNSSANTGRTHPKLFH 591
NG PSP NL + D+ I T Q I ++ T P S R HP+
Sbjct: 398 NGPPSPLNLQMTTFDSEIPLTFDQLPVSMESDRPLIEEMRSTSPPPPSGCLARFHPEAVD 457
Query: 592 TSPILKFSKPTRCWSEIFLFPYIS 663
I+ F ++ ++ + Y+S
Sbjct: 458 KFSIVAFPLAFTMFNLVYWWHYLS 481
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.58
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = +1
Query: 421 NGDPSPSNLNL---DTRISYTTFQXXXXXXXPSSKIRQLLHTKPTNSSANTGRTHPKLFH 591
NG PSP NL + D+ I T Q I ++ T P S R HP+
Sbjct: 398 NGPPSPLNLQMTTFDSEIPLTFDQLPVSMESDRPLIEEMRSTSPPPPSGCLARFHPEAVD 457
Query: 592 TSPILKFSKPTRCWSEIFLFPYIS 663
I+ F ++ ++ + Y+S
Sbjct: 458 KFSIVAFPLAFTMFNLVYWWHYLS 481
>Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical
protein F46F6.4d protein.
Length = 298
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 381 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 494
+EE ND DP Q P P S P YT T PP
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 42
>Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical
protein F46F6.4c protein.
Length = 320
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 381 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 494
+EE ND DP Q P P S P YT T PP
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 42
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 381 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 494
+EE ND DP Q P P S P YT T PP
Sbjct: 158 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 193
>DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagellar
transport proteinvariant c protein.
Length = 298
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 381 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 494
+EE ND DP Q P P S P YT T PP
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 42
>DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagellar
transport proteinvariant b protein.
Length = 320
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 381 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 494
+EE ND DP Q P P S P YT T PP
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 42
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 381 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 494
+EE ND DP Q P P S P YT T PP
Sbjct: 161 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 196
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = +3
Query: 384 EERSNDAP---DPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQF 554
++ N AP +A + P K P+ T V P P + + + P +Q
Sbjct: 275 QQPPNPAPVVQQASAPVQQAPPKPVPQQTPPVQQAPPKPAVQQAPTRAAPAPPKPAPQQA 334
Query: 555 SQYRQNPPKTISHQPNS*VLK 617
+QNPPK Q + V++
Sbjct: 335 PPVQQNPPKPAVQQAQAPVVQ 355
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 88 CASDLLCSRKRPSEFDYRNFDVTCERNKGLKRMRK 192
CA L+ S FD+RNF V C R L +M K
Sbjct: 1246 CAQLLIGYFDYYSRFDFRNFVVQCRREMILSKMEK 1280
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/65 (24%), Positives = 23/65 (35%)
Frame = +3
Query: 411 PNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKTIS 590
P P KS P + + PT P T +TPT T + + P T+
Sbjct: 273 PTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMK 332
Query: 591 HQPNS 605
P +
Sbjct: 333 STPTT 337
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/75 (21%), Positives = 26/75 (34%)
Frame = +3
Query: 381 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKNSSTPTYQTDEQFSQ 560
W + + + P KS P + + PT P T +TPT T + +
Sbjct: 149 WATKPTPSTMKSTPTTPTTIKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTP 208
Query: 561 YRQNPPKTISHQPNS 605
P T+ P +
Sbjct: 209 TTPTTPTTMKSTPTT 223
>U42438-8|AAF99867.2| 368|Caenorhabditis elegans Homolog of yeast
longevity geneprotein 1 protein.
Length = 368
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 295 NFTMMPCTLDAYTIG-TSATVTS*SMSCFF*LKLSTFAYV*ALYFVHRSRQSYD 137
N T++ C + T G S + + CF+ TFA++ LY + S YD
Sbjct: 68 NITLLGCMWEHMTGGFASVSRAKKILECFWRFSYYTFAFLYGLYVMKNSSWLYD 121
>AF105010-1|AAD16893.1| 368|Caenorhabditis elegans LAG1Ce-1
protein.
Length = 368
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 295 NFTMMPCTLDAYTIG-TSATVTS*SMSCFF*LKLSTFAYV*ALYFVHRSRQSYD 137
N T++ C + T G S + + CF+ TFA++ LY + S YD
Sbjct: 68 NITLLGCMWEHMTGGFASVSRAKKILECFWRFSYYTFAFLYGLYVMKNSSWLYD 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,484,899
Number of Sequences: 27780
Number of extensions: 322307
Number of successful extensions: 1035
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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