Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0506.Seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.7  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   6.3  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   6.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.3  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 491 RSSWNVVYDMRVSRLRFEGLGSPLSVGVW 405
           RSS +V   M  + + F GL S L++G W
Sbjct: 305 RSSQSVAEVMDRNGVLFFGLLSDLAIGCW 333


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 560 IQAEPTQNYFTPAQFLSSQSLPGVGLRYFCSLISQ*GQ 673
           I A P ++ F P +   ++       R  C L+S  GQ
Sbjct: 17  IMAAPVEDEFEPLEHFENEERADRHRRVTCDLLSFKGQ 54


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 560 IQAEPTQNYFTPAQFLSSQSLPGVGLRYFCSLISQ*GQ 673
           I A P ++ F P +   ++       R  C L+S  GQ
Sbjct: 17  IMAAPVEDEFEPLEHFENEERADRHRRVTCDLLSFKGQ 54


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 559 WLNCSSVWYVGVDEFLSLVKDRGGAVGTLY 470
           ++  S +W++G   FL         V T+Y
Sbjct: 290 YIKASEIWFLGCTIFLFAAMVEFAFVNTIY 319


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 586 IVLGGFCLYWLNCSSVWYV 530
           I++GGF L WL   +++ V
Sbjct: 13  IIVGGFILCWLPFFTMYLV 31


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 85  VCASDLLCSRKRPSEFDYRNFDVTCERNKGL 177
           VC    L    +  E ++  FD+ CE ++GL
Sbjct: 91  VCGIYFLAEPDQKIEINFITFDIPCE-HRGL 120


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 586 IVLGGFCLYWLNCSSVWYV 530
           I++GGF L WL   +++ V
Sbjct: 461 IIVGGFILCWLPFFTMYLV 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,448
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)