Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0506.Seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01560.1 68416.m00086 proline-rich family protein contains pr...    30   1.2  
At3g54590.1 68416.m06040 proline-rich extensin-like family prote...    29   2.9  
At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative ...    29   3.8  
At5g53770.1 68418.m06681 nucleotidyltransferase family protein c...    28   5.0  
At1g40230.1 68414.m04784 hypothetical protein                          28   5.0  
At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containi...    28   6.6  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    28   6.6  
At5g41360.1 68418.m05026 DNA repair protein and transcription fa...    27   8.8  

>At3g01560.1 68416.m00086 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 511

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 489 PPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKTISHQP 599
           PP    + +    P+YQ+  Q  QY Q PP +  + P
Sbjct: 301 PPYQAPQTQTPHQPSYQSPPQQPQYPQQPPPSSGYNP 337


>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 743

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
 Frame = +3

Query: 405 PDPNAQWRPQP---FKSQPRYTHIVYNVPTAP---PLSLTKLKNSSTPTYQTDEQFSQYR 566
           P P   + P P   +KS P     VYN P  P   P      K+   P+Y +     +Y+
Sbjct: 671 PPPPPCYSPSPKVVYKSPP--PPYVYNSPPPPYYSPSPKVYYKSPPPPSYYSPSPKVEYK 728

Query: 567 QNPPKTISHQPNS 605
             PP + S  P +
Sbjct: 729 SPPPPSYSPSPKT 741


>At1g33240.1 68414.m04108 trihelix DNA-binding protein, putative
           similar to GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 669

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 393 SNDAPDPNAQWRPQP-FKSQPRYTHIVYNVPTAPPLSLTKL 512
           S+ +P P    +PQP  ++QP  TH V   PT PPL L  +
Sbjct: 172 SSSSPFPVFS-QPQPQTQTQPPQTHNVSFTPTPPPLPLPSM 211


>At5g53770.1 68418.m06681 nucleotidyltransferase family protein
           contains Pfam domains PF03828: PAP/25A associated
           domain, PF01909: Nucleotidyltransferase domain
          Length = 530

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 483 TAPPLSLTKLKNSSTPTYQTDEQFSQYRQ 569
           T PPLS +    S  PT++   Q+S +R+
Sbjct: 17  TLPPLSFSDSNQSPPPTHEESHQYSVFRK 45


>At1g40230.1 68414.m04784 hypothetical protein
          Length = 303

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 477 VPTAPPLSLTKLKNSSTPTYQTDEQFSQYRQNPPKTISH 593
           VP +P   LT   +SS   Y T+  FS +  +PP+ +SH
Sbjct: 204 VPASP--FLTARVSSSLNRYTTNSPFSPFVVHPPELLSH 240


>At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 379

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 97  DLLCSRKRPSEFDYRNF-DVTCERNKGLKRM 186
           DLL  R  PSEFDY +  +  C  NK ++ M
Sbjct: 205 DLLNKRVLPSEFDYGSLVEKLCGENKAVRAM 235


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 405 PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTKLKN---SSTPTYQTDEQFSQYRQNP 575
           P P+  + P   +S P  T   Y+   +PP +    +     +TP+Y+   ++S Y  +P
Sbjct: 658 PPPSPVYYPSETQSPPPPTEYYYSPSQSPPPTKACKEGHPPQATPSYEPPPEYS-YSSSP 716

Query: 576 P 578
           P
Sbjct: 717 P 717


>At5g41360.1 68418.m05026 DNA repair protein and transcription
           factor, putative (XPB2) similar to SP|P49135 TFIIH basal
           transcription factor complex helicase XPB subunit (EC
           3.6.1.-) (Basic transcription factor 2 89 kDa subunit)
           {Mus musculus}; contains Pfam profile PF00271: Helicase
           conserved C-terminal domain; contains TIGRfam profile
           TIGR00603: DNA repair helicase rad25
          Length = 766

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 670 ASLRYKGTKISQTNTW*ALRT*ELGWCEIVLGGFCLYWLNCSSVWYVGVDEFLS--LVKD 497
           A+L  +  KI+  N     +  E  W ++V GGF +  + C+ VW     EF +  L K+
Sbjct: 435 ATLVREDEKITDLNFLIGPKLYEANWLDLVKGGF-IANVQCAEVWCPMTKEFFAEYLKKE 493

Query: 496 RGGAVGTLYTI 464
                  LY +
Sbjct: 494 NSKKKQALYVM 504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,505,713
Number of Sequences: 28952
Number of extensions: 299047
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)