Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0505X.Seq
(443 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 153 6e-38
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 153 6e-38
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 153 6e-38
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 151 2e-37
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 151 2e-37
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 151 2e-37
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 151 2e-37
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 151 2e-37
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 151 2e-37
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 151 2e-37
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 151 2e-37
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 151 2e-37
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 142 1e-34
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 140 4e-34
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 140 4e-34
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 96 9e-21
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 77 4e-15
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 76 1e-14
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 66 1e-11
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 37 0.008
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 37 0.008
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.28
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 30 0.87
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.1
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 3.5
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 3.5
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 3.5
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 3.5
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 3.5
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 3.5
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 3.5
AC024831-1|AAN63421.1| 500|Caenorhabditis elegans Hypothetical ... 27 4.6
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 27 6.1
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 27 6.1
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 27 6.1
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 27 8.1
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 27 8.1
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 27 8.1
AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protei... 27 8.1
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 27 8.1
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 27 8.1
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 153 bits (371), Expect = 6e-38
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 433 PAM 441
PAM
Sbjct: 131 PAM 133
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 153 bits (371), Expect = 6e-38
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 40.3 bits (90), Expect = 6e-04
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKI 300
PIEHGI+TNWDDMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 153 bits (371), Expect = 6e-38
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 34.7 bits (76), Expect = 0.031
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1
Query: 253 PIEHGIITNWDDM 291
PIEHGI+TNWDDM
Sbjct: 71 PIEHGIVTNWDDM 83
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 151 bits (367), Expect = 2e-37
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 433 PAM 441
PAM
Sbjct: 131 PAM 133
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 151 bits (367), Expect = 2e-37
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 433 PAM 441
PAM
Sbjct: 131 PAM 133
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 151 bits (367), Expect = 2e-37
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 433 PAM 441
PAM
Sbjct: 131 PAM 133
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 151 bits (367), Expect = 2e-37
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 433 PAM 441
PAM
Sbjct: 131 PAM 133
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 151 bits (367), Expect = 2e-37
Identities = 68/71 (95%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 433 PAM 441
PAM
Sbjct: 131 PAM 133
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 151 bits (367), Expect = 2e-37
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 433 PAM 441
PAM
Sbjct: 131 PAM 133
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 151 bits (367), Expect = 2e-37
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 130
Query: 433 PAM 441
PAM
Sbjct: 131 PAM 133
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 151 bits (367), Expect = 2e-37
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 40.3 bits (90), Expect = 6e-04
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKI 300
PIEHGI+TNWDDMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 151 bits (367), Expect = 2e-37
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQ 223
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 224 SKRGILTLKYP 256
SKRGILTLKYP
Sbjct: 61 SKRGILTLKYP 71
Score = 40.3 bits (90), Expect = 6e-04
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKI 300
PIEHGI+TNWDDMEKI
Sbjct: 71 PIEHGIVTNWDDMEKI 86
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 142 bits (344), Expect = 1e-34
Identities = 64/69 (92%), Positives = 69/69 (100%)
Frame = +2
Query: 50 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQSK 229
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 230 RGILTLKYP 256
RGILTLKYP
Sbjct: 62 RGILTLKYP 70
Score = 138 bits (335), Expect = 1e-33
Identities = 58/63 (92%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPK+NREKMTQIMFE FN+
Sbjct: 70 PIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSNREKMTQIMFETFNT 129
Query: 433 PAM 441
PAM
Sbjct: 130 PAM 132
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 27 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 86
Query: 433 PAM 441
PAM
Sbjct: 87 PAM 89
Score = 58.4 bits (135), Expect = 2e-09
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +2
Query: 176 MVGMGQKDSYVGDKAQSKRGILTLKYP 256
MVGMGQKDSYVGD+AQSKRGILTLKYP
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYP 27
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 140 bits (339), Expect = 4e-34
Identities = 60/63 (95%), Positives = 62/63 (98%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE FN+
Sbjct: 57 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 116
Query: 433 PAM 441
PAM
Sbjct: 117 PAM 119
Score = 112 bits (270), Expect = 1e-25
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +2
Query: 98 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKAQSKRGILTLKYP 256
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD+AQSKRGILTLKYP
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 57
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 96.3 bits (229), Expect = 9e-21
Identities = 40/66 (60%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Frame = +1
Query: 247 EVPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFEN 423
E P+EHGI+ NW DMEKIW + F ++L++ PEEHPVLLT+APLNP NRE+ +I FE
Sbjct: 71 EYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFET 130
Query: 424 FNSPAM 441
FN PA+
Sbjct: 131 FNVPAL 136
Score = 73.3 bits (172), Expect = 7e-14
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Frame = +2
Query: 50 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDKA 220
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G KA
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 221 QSKRGILTLKYP 256
+S RG+ +++YP
Sbjct: 62 ESNRGLFSIEYP 73
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 77.4 bits (182), Expect = 4e-15
Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFENF 426
P+++GI+ NWDDM +W HTF E L + P+E +LLTE PLNP +NREKM Q+MFE +
Sbjct: 73 PMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNREKMFQVMFEQY 131
Score = 54.0 bits (124), Expect = 5e-08
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +2
Query: 68 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDKAQSKRGIL 241
+VVDNG+G K G+AG + P +FPS+VGRP R + + KD VG++ R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 242 TLKYP 256
+ YP
Sbjct: 69 DINYP 73
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 75.8 bits (178), Expect = 1e-14
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNS 432
PI HGI+ +WD ME+ W + LR PE+H LLTE PLN NRE +IMFE+FN
Sbjct: 84 PIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNV 143
Query: 433 PAM 441
P +
Sbjct: 144 PGL 146
Score = 37.5 bits (83), Expect = 0.004
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Frame = +2
Query: 44 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 187
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 188 GQKDSYVGDKAQSKRGI-LTLKYP 256
D ++GD+A S T+KYP
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYP 84
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/61 (47%), Positives = 41/61 (67%)
Frame = +1
Query: 256 IEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENFNSP 435
++ G+I +W+ EKI H++ N L P EHPVL +E+ N +A REK+T+IMFE F P
Sbjct: 94 MKEGLIEDWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVP 153
Query: 436 A 438
A
Sbjct: 154 A 154
Score = 33.9 bits (74), Expect = 0.053
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 53 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 151
D+V+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 36.7 bits (81), Expect = 0.008
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENF 426
PIE G + NWD ++IW TF + V + LT+ A + ++I+F+ F
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYF 118
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 59 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDK 217
+ ++ DNG K G ++PR V P+ + + +H+ V + + DK
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLV-PNSIVKAKHEKKRVFVAHEQEECSDK 54
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 36.7 bits (81), Expect = 0.008
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 253 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFENF 426
PIE G + NWD ++IW TF + V + LT+ A + ++I+F+ F
Sbjct: 62 PIERGYVVNWDTQQQIWEKTF-GSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYF 118
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +2
Query: 59 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDK 217
+ ++ DNG K G ++PR V P+ + + +H+ V + + DK
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLV-PNSIVKAKHEKKRVFVAHEQEECSDK 54
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.28
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 75 STMAPACARPVSPATTRPAPSSRP 146
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 29.9 bits (64), Expect = 0.87
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 66 RL*STMAPACARPVSPATTRPAPSSRPSWVALATRA 173
RL S +AP A P S A TR APS + VA RA
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 266
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 189 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 79
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 239 GYLSCSGPCHPRRSLSGPYRPSRPGGEG 156
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 239 GYLSCSGPCHPRRSLSGPYRPSRPGGEG 156
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 239 GYLSCSGPCHPRRSLSGPYRPSRPGGEG 156
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 239 GYLSCSGPCHPRRSLSGPYRPSRPGGEG 156
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -1
Query: 239 GYLSCSGPCHPRRSLSGPYRPSRPGGEG 156
GY GP P + GP P PG EG
Sbjct: 423 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 450
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 98 KAGFAGDDAPRAVFPSIVGRPRHQG 172
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 75 STMAPACARPVSPATTRPAPSSRPSWVALATRA 173
S +AP A P S A TR APS + VA RA
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 270
>AC024831-1|AAN63421.1| 500|Caenorhabditis elegans Hypothetical
protein Y55F3C.7a protein.
Length = 500
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 102 PVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRPRAREVSSL*STH 257
P++ A+ P+SR S + R+ ++ R +TRP AR +S TH
Sbjct: 429 PITVASEYGVPASRNSDASSEGRSSNEIYRRPNQIALTRPEARHSNSTFMTH 480
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 191 QKDSYVGDKAQSKRGILTLKYPSSTVSSPTGMTW 292
Q++ V + AQ+ G+L L YPS + P W
Sbjct: 357 QQEKSVAEVAQAGPGLLFLAYPSGILQLPYTQFW 390
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 191 QKDSYVGDKAQSKRGILTLKYPSSTVSSPTGMTW 292
Q++ V + AQ+ G+L L YPS + P W
Sbjct: 357 QQEKSVAEVAQAGPGLLFLAYPSGILQLPYTQFW 390
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 191 QKDSYVGDKAQSKRGILTLKYPSSTVSSPTGMTW 292
Q++ V + AQ+ G+L L YPS + P W
Sbjct: 357 QQEKSVAEVAQAGPGLLFLAYPSGILQLPYTQFW 390
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 277 NWDDMEKIWHHTFYNE--LRVAPEEHPV 354
+++D++ IWHH Y E L+ E +PV
Sbjct: 172 HYNDLQDIWHHARYKESQLKRGKELNPV 199
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 786 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 828
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 389 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 431
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 749 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 791
>Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical
protein C36B1.1c protein.
Length = 650
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 261 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 303
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 786 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 828
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 389 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 431
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 749 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 791
>AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protein
protein.
Length = 650
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 261 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 303
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 389 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 431
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 157 PSPPGRDGRYGPERLLRG*QGPEQERYPHSEVPIEHGIITNWDDMEKI 300
P PGRDG G E G +GP+ P + + +T+ DD+E+I
Sbjct: 728 PGAPGRDGTSGVE----GQRGPQGPPGPKGDDGVSMESLTD-DDIERI 770
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,698,393
Number of Sequences: 27780
Number of extensions: 241464
Number of successful extensions: 1089
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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