Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0504.Seq
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 174 8e-45
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 5e-23
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 101 7e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 100 2e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 3e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 2e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 60 2e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 47 2e-06
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.19
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 3.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.1
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 26 4.1
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 25 5.4
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.2
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 25 7.2
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 9.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 174 bits (423), Expect = 8e-45
Identities = 78/86 (90%), Positives = 82/86 (95%)
Frame = +2
Query: 257 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 436
PIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+
Sbjct: 70 PIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNA 129
Query: 437 PAMYVAIQAVLSLYASGRTTGIVLTS 514
PA YVAIQAVLSLYASGRTTGIVL S
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDS 155
Score = 71.7 bits (168), Expect = 6e-14
Identities = 30/35 (85%), Positives = 35/35 (100%)
Frame = +1
Query: 55 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 159
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVG
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVG 36
Score = 60.1 bits (139), Expect = 2e-10
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +3
Query: 162 PRHQGVMVGMGQKDSYVGYEAQSKTGILNLKTP 260
PRH G+MVGMGQKDSYVG EAQSK GIL LK P
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYP 70
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (243), Expect = 5e-23
Identities = 44/90 (48%), Positives = 67/90 (74%)
Frame = +2
Query: 245 QSEDPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 424
Q + P+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE
Sbjct: 66 QVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFE 125
Query: 425 TFNSPAMYVAIQAVLSLYASGRTTGIVLTS 514
+ +YVAIQAVLSLYA G ++G+V+ S
Sbjct: 126 RYGFGGVYVAIQAVLSLYAQGLSSGVVVDS 155
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +1
Query: 67 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSLATRA 177
A +V+DNG+G K G+A D+ PR FPSIVG RA
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 101 bits (242), Expect = 7e-23
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 PIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 433
PIE GII NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLN 133
Query: 434 SPAMYVAIQAVLSLYASGRTTGIVL 508
PA+ ++Q VL+LYAS RTTGIVL
Sbjct: 134 VPALSFSLQPVLALYASARTTGIVL 158
Score = 47.6 bits (108), Expect = 1e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 61 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSL 165
D + +DNGSG KAGFAGDD P+ +FP+ VG +
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRI 42
Score = 32.7 bits (71), Expect = 0.036
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 165 RHQGVMVGMGQKDSYVGYEAQSKTGILNLKTP 260
+H+ VM QKD +VG EAQ+ G+L ++ P
Sbjct: 43 KHERVMPSSIQKDMFVGSEAQNLRGLLKIQRP 74
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 100 bits (239), Expect = 2e-22
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
Frame = +2
Query: 119 ATTRPAPSSRPSWVASPPGR--DGRYGPERL--LRGIRGPEQDRYPQSED-PIEHGIITN 283
A++ PA SS+PS++AS + E L G ++ S D PI HG I N
Sbjct: 42 ASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIEN 101
Query: 284 WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQA 463
WD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QA
Sbjct: 102 WDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQA 161
Query: 464 VLSL---YASGRTTGIVLTSEMVSS 529
VL+L + S + T LT +V S
Sbjct: 162 VLALAASWTSSKVTDRSLTGTVVDS 186
Score = 41.5 bits (93), Expect = 8e-05
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +1
Query: 73 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGSLATRA 177
+++DNG+G K G+AG+DAP VFP+++ + + A
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGA 42
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 69.7 bits (163), Expect = 3e-13
Identities = 31/86 (36%), Positives = 49/86 (56%)
Frame = +2
Query: 251 EDPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 430
++ I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MFE+
Sbjct: 66 KNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESL 125
Query: 431 NSPAMYVAIQAVLSLYASGRTTGIVL 508
PA Y+A Q + +ASG+ T ++
Sbjct: 126 RCPATYLAKQETCAAFASGKGTACLV 151
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +1
Query: 58 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSLA 168
D+V+A+V+D GS + GF+G+D P+ V PS G +
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFS 45
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.9 bits (156), Expect = 2e-12
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 SEDPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 427
+ P E +I+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 428 FNSPAMYVAIQAVLSLYASGR--TTGIVL 508
+N+P++ I + S Y + + ++GIVL
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVL 170
Score = 34.7 bits (76), Expect = 0.009
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 4 ESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGSLATR 174
E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R
Sbjct: 8 EPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR 60
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 60.1 bits (139), Expect = 2e-10
Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = +2
Query: 266 HGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 445
+GII +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 446 YVAIQAVLSLYASGRTTGIV--LTSEMVSSTP 535
Y+ QAV +A+ ++T ++ + S+ S TP
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTP 165
Score = 34.3 bits (75), Expect = 0.012
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 58 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 159
+++ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.8 bits (106), Expect = 2e-06
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +2
Query: 242 PQSEDPIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 409
P PI+ G + +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 410 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVL 508
Q FE P +A + ++ LYA G G+V+
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVI 199
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.19
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 317 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 460
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.2 bits (55), Expect = 3.1
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +2
Query: 101 ARPVSPATTRPAPSSRPSWVASPPGRDGRYGPERLLRGIRGPEQDRYPQSEDPIEHGIIT 280
+ P P+ +PA SSRP V S +G + + +D P+S T
Sbjct: 532 SHPAKPSNAQPADSSRPYAVFSQE-ENGEHVNLKAFPDHTLRVKDSKPESLGIDTVKQYT 590
Query: 281 NWDDMEKIWHHTF-YNELRVAPEEHPVLL 364
+ D+E H F + E R PE PV+L
Sbjct: 591 GYLDVEDDRHLFFWFFESRNDPENDPVVL 619
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 359 LLTEAPLNPKANREKMTQIMFETFN 433
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 101 ARPVSPATTRPAPSSRPSWVASPPGRDGR 187
A P P PAP++ + +A P +DGR
Sbjct: 472 AAPAPPPAPAPAPAAPVASIAELPQQDGR 500
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 119 ATTRPAPSSRPSWVASPPGRDGRYGPERLLRGIRGPEQDRYPQS 250
AT R S S ++ GRD L GI GP+ + P S
Sbjct: 212 ATPRSVHSDNQSQISIEVGRDAPAAAATDLSGIIGPQMTKSPAS 255
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +2
Query: 137 PSSRPSWVASPPGRDGRYGPE 199
P RP W SP G +GP+
Sbjct: 203 PDDRPGWGISPRGAGYTFGPD 223
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 191 HTDHHALVARLPTMDGKTARGASSPAKPAL 102
H +++ALVA L + T + AS +P+L
Sbjct: 263 HYEYNALVAELEERNDNTLQAASKRPRPSL 292
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = -3
Query: 280 GDDTVLDGVFRLRIPVLLWASYPT*ESFWPIPTITPWW 167
GDD L G R +LW P + P+P + W
Sbjct: 94 GDDATLSGETIKRAAAILWHKIPEYQD-QPVPNFSNGW 130
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 73 LVVDNGSGMCKAGFAG 120
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 9.5
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 107 PVSPATTRPAPSS---RPSWVASPPGRDGRYGPERLLRGIRGPEQDRYPQSEDPIEHGI 274
P SP T APS+ RPS A+P G + P G+ G + S P+ H I
Sbjct: 316 PSSPKT-EGAPSNAQFRPSLPATPNGSVPQSNPLYDTTGLNGGQYPVVQNSAQPLLHEI 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,709
Number of Sequences: 5004
Number of extensions: 47049
Number of successful extensions: 182
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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