Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0503X.Seq
         (514 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3A863 Cluster: Putative uncharacterized protein; n=3; ...    33   2.9  
UniRef50_A6Y2E6 Cluster: Nitroreductase; n=23; Vibrio cholerae|R...    32   8.8  

>UniRef50_A3A863 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa (japonica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. japonica
           (Rice)
          Length = 396

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +2

Query: 101 RLGQRLYRPPRLWWRSRLKQ*FGIWKGLWL*QRARHXRWAGFRRRSR 241
           RLG+R +R  R W R   ++ + +W+G    +R R  RW G RRR R
Sbjct: 211 RLGRR-WRQARKWRRRGARRHWILWRGR---RRRRIRRWGGLRRRIR 253


>UniRef50_A6Y2E6 Cluster: Nitroreductase; n=23; Vibrio cholerae|Rep:
           Nitroreductase - Vibrio cholerae RC385
          Length = 259

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 394 TVGVTVIMITSCSTTAPISASRPWSRRLGVKAPS 293
           T+ ++V+++ SCST A     +PW+  + V  PS
Sbjct: 21  TLLLSVLLLNSCSTNAAYKTEQPWAWSISVTMPS 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,146,705
Number of Sequences: 1657284
Number of extensions: 6010579
Number of successful extensions: 14392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14388
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)