Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0503X.Seq
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   2.2  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   8.8  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   8.8  

>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +3

Query: 285 LAPEGAFTPSLLDHGLEADIGAV--VEHDVIMITVTPTVSTLLAS 413
           L+PE    PS++DH  +++I AV  V  D     +T T+S+ +++
Sbjct: 211 LSPEFIKKPSMVDHKRDSEINAVTAVSADGSFSPLTETLSSTIST 255


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 334 SRPWSRRLGVKAPSGAKAYTGTVISSEF 251
           + P SRR+ VK     +A+T T++   F
Sbjct: 109 TEPHSRRIKVKLTVQKEAFTNTILQQSF 136


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 377 YHDHVMFHDGAYIGL*TVVQKTRSEGPLRS*GLYRNRYQLRISTRAETSAGTQP 216
           + D   +  G  +G+ T   K  + GP+   GL   +YQLR + +  +S G  P
Sbjct: 379 FADGFRYGYGTEVGIST--NKIHARGPMGLDGLTIYKYQLRGNGQVASSYGVGP 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,286
Number of Sequences: 5004
Number of extensions: 21406
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)