Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0503X.Seq
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0070 + 40874141-40874458                                         32   0.31 
01_07_0069 + 40869496-40869535,40869627-40869663,40870241-408703...    31   0.54 
11_04_0265 + 15541329-15541568,15541653-15541901,15542172-155423...    27   6.7  
07_03_1077 - 23787606-23788184                                         27   6.7  
06_03_1446 - 30220158-30220278,30220866-30222229                       27   6.7  
06_03_1434 - 30139990-30140110,30140698-30142061                       27   6.7  
02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703     27   8.8  

>01_07_0070 + 40874141-40874458
          Length = 105

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 333 EADIGAVVEHDVIMITVTPTVSTLLASGLM 422
           + D G V+  DV+ +TV PT   LL  GLM
Sbjct: 66  QTDTGVVLRDDVLSLTVGPTADRLLVVGLM 95


>01_07_0069 +
           40869496-40869535,40869627-40869663,40870241-40870387,
           40872360-40872405,40872580-40872846,40873151-40873540
          Length = 308

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 333 EADIGAVVEHDVIMITVTPTVSTLLASGLM 422
           + D G V+  DV+ +TV PT   LL  GLM
Sbjct: 269 QTDAGVVLGDDVLTLTVGPTADRLLVVGLM 298


>11_04_0265 +
           15541329-15541568,15541653-15541901,15542172-15542321,
           15542427-15542901,15543132-15543445,15543875-15543973,
           15544567-15544659,15544737-15544922
          Length = 601

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = -3

Query: 488 QNRKRDRSQK-------TGPGRGPRSLRVHKTRGQ*S*DCRSHGYHD 369
           Q +K+DRS+        TG  +  RS +  K RG+ S + +  G+HD
Sbjct: 90  QPKKKDRSKDDEVPANTTGSKKSERSAKAKKRRGERSVNRKDEGFHD 136


>07_03_1077 - 23787606-23788184
          Length = 192

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 104 LGQRLYRPPRLWWRSRLKQ*FGIWKGLWL*QRARHXRWAGFRRRSRL 244
           LG +L      W  S L +  G+W  +W     R  R  G RR + L
Sbjct: 109 LGDKLAVLADYWNASGLGEALGVWAAVWRRGGGRRRRGGGLRRLAAL 155


>06_03_1446 - 30220158-30220278,30220866-30222229
          Length = 494

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +1

Query: 421 WTRRLRGPRPGPVFWLRSLLR---FWCTPW-YPMP 513
           W RR R P+P P    RS +R    W T W  P+P
Sbjct: 321 WVRRSREPQPQPTTRQRSSVRRPGQWLTTWTMPIP 355


>06_03_1434 - 30139990-30140110,30140698-30142061
          Length = 494

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +1

Query: 421 WTRRLRGPRPGPVFWLRSLLR---FWCTPW-YPMP 513
           W RR R P+P P    RS +R    W T W  P+P
Sbjct: 321 WVRRSREPQPQPTTRQRSSVRRPGQWLTTWTMPIP 355


>02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703
          Length = 379

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 270 VPV*ALAPEGAFTPSLLDHGLEADI-GAVVEHDVIMITVTP 389
           VPV A +  G   P    HGLEAD  G  V  DV  +T+ P
Sbjct: 308 VPVVASSGNGVRLPGFALHGLEADAWGGAVAFDV-ALTMPP 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,254,740
Number of Sequences: 37544
Number of extensions: 178852
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)