Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0503X.Seq
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.97 
SB_54136| Best HMM Match : YbgT_YccB (HMM E-Value=3)                   28   5.2  
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)       28   5.2  

>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 394 SQLYWPRVLWTRRLRGPRPGPVFWLRSLLRFWCTP 498
           S   WP ++    L+GP P  ++  +S+ R+W TP
Sbjct: 795 SLFLWPLLMEKVPLKGPHPMNLYSYQSVPRYWTTP 829


>SB_54136| Best HMM Match : YbgT_YccB (HMM E-Value=3)
          Length = 157

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 391 VGVTVIMITSCSTTAPISAS-RPWSRRLGVKAPSGA 287
           VG+ +I I +   TA +SAS RP+   LG K P G+
Sbjct: 9   VGINIIAIFTALVTASVSASTRPYFNILGAK-PGGS 43


>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
          Length = 754

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 65  KTRSLWI*FRRPRLGQRLYRPPRLWWRSR 151
           +T  + +  RR R G RL +PP  WWR +
Sbjct: 120 ETTPIEVELRRSRSG-RLIKPPMAWWRGQ 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,312,255
Number of Sequences: 59808
Number of extensions: 201086
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)