Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0503X.Seq
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22920.1 68417.m03310 expressed protein                             28   3.2  
At2g34010.1 68415.m04164 expressed protein                             27   9.8  

>At4g22920.1 68417.m03310 expressed protein
          Length = 268

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 427 ESIRPEANRVETVGVTVIMITSCSTTAPISASRPWSRRLGVKAPSGAKAYTGT 269
           E++ P+ ++ ET+         CS   P  +S PWS  L   +  G   Y+GT
Sbjct: 207 EAVSPDGHKTETLP-EARCADECSCCFPTVSSIPWSHSL---SNEGVNGYSGT 255


>At2g34010.1 68415.m04164 expressed protein
          Length = 211

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 421 IRPEANRVETVGVTVIMITSCSTTAPISASRPWS 320
           I P+A +  ++G+T +  T  +T+ PI+   P S
Sbjct: 105 ISPDATQNRSMGITPVQETGTTTSNPIAIDSPTS 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,823,532
Number of Sequences: 28952
Number of extensions: 126966
Number of successful extensions: 257
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)