Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0502.Seq
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           30   0.97 
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124...    28   5.2  
12_02_0335 - 17669232-17670063,17670619-17672150                       27   9.0  
01_01_0137 + 1249081-1249341,1249500-1250237                           27   9.0  

>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 137 VSQNTGTCPESSCACPETSCACPETSCA 220
           ++++  TCP + C CPE  C     S A
Sbjct: 116 ITEHEKTCPHAPCFCPEPGCGFAAASAA 143


>01_01_0136 +
           1237623-1237820,1238313-1239001,1239978-1240308,
           1240614-1241351
          Length = 651

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 137 VSQNTGTCPESSCACPETSCACPETSCACP 226
           V+ +   CP + C+CPE  C    +  A P
Sbjct: 465 VADHQRACPCAPCSCPEPGCRFRSSPAALP 494


>12_02_0335 - 17669232-17670063,17670619-17672150
          Length = 787

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 GTCPESSCACPETSCACPETSC 217
           G C ESSC       +C +TSC
Sbjct: 581 GPCAESSCISSSCQPSCAQTSC 602


>01_01_0137 + 1249081-1249341,1249500-1250237
          Length = 332

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 152 GTCPESSCACPETSCACPETSC 217
           G   E   ACP   C+CP+  C
Sbjct: 143 GAAAEHQRACPCAPCSCPDPGC 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,382,641
Number of Sequences: 37544
Number of extensions: 41992
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)