Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0502.Seq
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40) 29 2.3
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 29 3.0
SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9) 28 4.0
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 7.0
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 7.0
SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 27 9.3
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 131 TCVSQNTGTCPESSCACPETSCACPETSCACPE 229
T T P+++ A PE + A PE + A PE
Sbjct: 33 TAAPDATTAAPDATTAAPEATTAAPEATTAAPE 65
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 131 TCVSQNTGTCPESSCACPETSCACPETSCACPE 229
T T P+++ A P+ + A PE + A PE
Sbjct: 26 TAAPMETTAAPDATTAAPDATTAAPEATTAAPE 58
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 131 TCVSQNTGTCPESSCACPETSCACPETSCACP 226
T T PE++ A PE + A PE + A P
Sbjct: 40 TAAPDATTAAPEATTAAPEATTAAPEATTAAP 71
>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +2
Query: 131 TCVSQNTG-TC--PESSCACPETSCACPETSCACPENSLC 241
TCV Q G TC P+SS CP+ A P +S C + C
Sbjct: 293 TCVDQVNGFTCLLPDSSETCPDNVGANPCSSNPCRNGATC 332
>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
Length = 580
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 152 GTCPESS-CACPETS-CACPETSCACPENSL 238
G P S+ CAC TS CA P C C N +
Sbjct: 503 GATPGSNKCACGMTSSCASPSNGCNCDSNDM 533
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 143 QNTGTCPESSCACPETSCACPETSCACPENS 235
+ T PE + A PE + PE + CPE +
Sbjct: 84 EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 143 QNTGTCPESSCACPETSCACPETSCACPENS 235
+ T PE + A PE + A PE + A PE +
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGN 163
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 143 QNTGTCPESSCACPETSCACPETSCACPENS 235
+ T PE + CPE + PE + PE +
Sbjct: 98 EGNSTSPEGNSTCPEGNSTSPEGNSTSPEGN 128
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 143 QNTGTCPESSCACPETSCACPETSCACPENS 235
+ TCPE + PE + PE + PE +
Sbjct: 105 EGNSTCPEGNSTSPEGNSTSPEGNSTSPEGN 135
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 140 SQNTGTCPESSCACPETSCACPETSCACPENS 235
++ T PE + A PE + PE + A PE +
Sbjct: 69 TEGNSTSPEGNSASPEGNSTSPEGNSASPEGN 100
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 134 CVSQNTGTCPESSCACPETSCACPETSCACPENSL 238
C+ N C + + C S CP+ S CP++++
Sbjct: 998 CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSNV 1031
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 140 SQNTGTCPESSCACPETSCACPETSCACPENSL 238
S++ TC S CP+ S CP+++ E S+
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETSV 1038
>SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)
Length = 117
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 158 CPESSCACPETSCACPETSCACP 226
CP + ACP T CP T CP
Sbjct: 4 CPLTLLACPLTLFTCPLTPFTCP 26
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 155 TCPESSCACPETSCACPETSCACPENSL 238
TCP + CP CP T CP + L
Sbjct: 24 TCPLTPFTCPLPPFTCPLTLLTCPLDML 51
>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 134 CVSQNTGTCPESSCACPETSCACPETSC 217
CVS P + ACP + AC SC
Sbjct: 80 CVSYRYDRVPYLTSACPNVTSACQRVSC 107
>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 116 CKLY*TCVSQNTGTCPESSCACPETSC 196
C L C SQ TC + +C C TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 161 PESSCACPETSCACPETSCACP 226
P S CP+T CP S CP
Sbjct: 153 PFGSTVCPDTLTRCPAGSTCCP 174
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 213 LVSGQAQLVSGQAQLLSGQVPVFWLT 136
++ GQ Q+VSG AQ + G + W++
Sbjct: 1945 IIDGQRQVVSGHAQKIRGAQALVWVS 1970
>SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 152 GTCPESS-CACPETS-CACPETSCACPEN 232
G P S+ CAC TS CA P C C N
Sbjct: 597 GATPGSNKCACGMTSSCANPSNGCNCDSN 625
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 164 ESSCACPETSCACPETSCACPENSLC 241
E C+CP CP C P +LC
Sbjct: 214 EKHCSCPSNMFLCPSGEC-IPTTALC 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,015,137
Number of Sequences: 59808
Number of extensions: 52785
Number of successful extensions: 397
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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